Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01221 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTAGCTCCAAGAAAAGACACTTGGAATGCTTTGTCAACTGGTTTGAATGAGTTACTTCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGCTTTAGCTACTTTAAATCCTTCATTTGCTTCATTTTCAACTCTATTAGACCATAGATTTGAATGTCCTTATGGCAGTGAAGCAGCAGCATACCCTTTTGTTGATGGATTCACAATGCCAGAGCTTGATTCATCATACACCAGGAATGATGAGTCAGCACCACTTTTACCACAAGAAGATAACCCTTCAATGGAAGATATTGATGAAGAGTTTGGCTTTCTGGGGGGGAATGATAATCACATTTTGGAACAAAGAAAAAGTAGCTGCAAAATTGAGGAACAAGTTACTGAGATTCCAGTCTTCGACATGGGTATGTGTGAAGAGAAAAAGCCCAAATCCAAAAAGGTAGAAGGGCAGCCTTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGTTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGACAGGACCTCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTCTCGAAAGGATTGGTAAGTTGCAAGAAGAAATGGAGGAGGGAACAAATCAGATAAACCTCTTGGGAATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAAGACACAAGGATCAGTATCTGCTGTGCCACAAAGCCAGGATTATTACTGTCAACAGTGAACACTTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGCTGCCGGGCAGAGTAATTGTATGAGCCCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 1005 0.4119 MELSQLGFLEELLAPRKDTWNALSTGLNELLPSGWSFDSFDENQALATLNPSFASFSTLLDHRFECPYGSEAAAYPFVDGFTMPELDSSYTRNDESAPLLPQEDNPSMEDIDEEFGFLGGNDNHILEQRKSSCKIEEQVTEIPVFDMGMCEEKKPKSKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEAAGQSNCMSPEEIKQALFRNAGYGGRCL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01221 334 Gene3D - 152 228 IPR036638 GO:0046983
Rops1g01221 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 328 - -
Rops1g01221 334 SMART finulus 168 217 IPR011598 GO:0046983
Rops1g01221 334 Coils Coil 208 228 - -
Rops1g01221 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Rops1g01221 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 232 IPR036638 GO:0046983
Rops1g01221 334 CDD ACT_UUR-ACR-like 260 301 - -
Rops1g01221 334 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01221 Rops-Chr1 28116975 28118589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01221 9 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.690 1.27e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01221 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01221 - - gmx:100806571 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01221 1 28116975 28118589 Rops2g02876 2 50493070 50494690 PCT