Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01213 ATGGATTCTTCAATGAAGACAACATTGCAATATCTTTGGAAGCAACTCCTCAAACATCCCTCACCGGCCTCACAAGTTAGTGACACCTTAACCTCAAACATGACTCGAGCCAATGGCCATCGTAATGAAACTGTGATTGACATAAAGAAACCAGTGAATTTCACTGGGGGCCTTGCTTTTGAATCCCTTACATACACTGTGACAAAGAAGAAGAAGGTTGAGGGGAAGTGGTGGAATGAAGAGGTGGACTTGTTGCATAATATCACTGGTTATGCACCAAAGGGTTGCATCACTGCAGTGATGGGTCCTAGTGGTGCAGGAAAGTCCACTCTTTTGGATGGGCTTGCTGGGAGAATTGCTAGTGGGAGCCTTAAAGGGAGGGTCTCCTTGGATGGGGCAACTGTGAGTGCAAGCTTGATCAAAAGAACCTCTGCATATATCATGCAGGAAGATAGGCTTTTTCCAATGCTCACTGTCTATGAGACTTTGATGTTTGCTGCTGATTTCCGCTTGGGGCCACTTTCATTTGCTGATAAGAAGCAGAGGGTAGAGAAGCTGATTGAGCAGCTAGGATTATCATCATCTAGGAACACCTACATAGGAGATGAAGGGACTAGAGGAGTGTCTGGTGGAGAACGTAGAAGGGTCTCAATTGGAGTGGACATCATCCATGGACCCTCACTTTTGTTTCTTGATGAGCCAACTTCAGGTCTTGACTCAACCAATGCTCATGGTGTGATTGAAAAGGTGCATGACATTGCACGCAATGGAAGCACAGTGATTCTCACCATCCACCAACCCTCATCAAGAATCCAATTGCTTCTTGACCATCTCATCATCTTAGCAAGAGGGCAACTCATGTTTCAAGGGTCACCTAAAGATGTAACTCTCCACTTGAGTCGCATGTCACGCAAAGTTCCCAAAGGAGAGAACCCAATTGAGCACCTCATTGATGTGATTCAAGAGTATGATCAATCTGAAGTTGGAGTTGAGGCACTAGCTGAGTTTGCACGCACAGGGATGAAACCCCCTCGTTTGTCTGACATGGAGGAACTGTCGCTGTCACTGTCACAATCCTCTATTGCACCCTCACCATCCCCATCTTTTAACCGAGGCAATGGATATGAGGGAAAATCTCAAGACTTCTCTTACTCCTCACAAAAGAGTAGGCAGCAGATTGTAAGTGATTTTGATCACAGTGTGAGAAGTGCATATCACACATCAATGTCATGGAGCGCCAGTAATAGTGCAGTGTTCTTAAAATTCACACCTTCACGACTTAAAAATGATCAGAAGGTGCAGAAGCCCGCAAGTCATGCTTCCCCTGGCTATTACACATACTCTAATGAAATCCTCCCAGCCACTCCAACACCACATAGCAGTGACTACACAGTGAATGAGAATGATTATCTCACTCCCACAAATGGCACACCAGAACATCTTGGTCCAAAATTTGCAAACTCTTACATAGGAGAGACTTGGATCCTCATGCGCCGTAACTTTGTAAACATCAGGAGAACCCCTGAGCTTTTTCTATCAAGACTAATGGTCCTCACCTTCATGGGGTTCATGATGGCTACCATGTTCCACAACCCCAAAGAAAGCTTGCAAGGAATCACAAACCGTCTCAGTTTCTTCATCTTCACAGTATGCCTCTTCTTCTTCTCTTCCAATGATGCTGTCCCAGCCTTCATCCAAGAGAGGTTCATCTTCATCCGTGAGACTTCACACAATGCTTATAGAGCTTCCTCTTACACCATTGCAAGCCTAATCACTCACATGCCATTTCTTGCTCTCCAAGCTTCAGCCTATGCAGGCATTGTTTGGTTTGCTCTAAAGCTTAGAGGCCCTTTCCTCTACTTCTTGGTTGTTCTCTTTGTTTCTCTTCTTTCAACCAACTCATTTGTTGTTTTTGTGAGCTCAGTGGTTCCAAACTACATCTTGGGTTATGCTGCAGTGATTGCATTCACTGCACTTTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCCAAGACATTCCAGCTTATTGGCGTTGGATGAACAAAATTTCAACAATGACATACCCTTATGAGGGTCTTTTGATGAACCAGTATCAGACCAATGATACCTTTGGGAGAACTGATGGTATACCCGTTACAGGTTTTGATATCTTGAATAGTCTTCATATTGGGACTGAAGGATATAAGAAGAGGAACAACGTGCTTATAATGTTAGGTTGGGCCGTGCTATATAGGATCTTATTTTACTTAATCCTTCGTTTTGCATCAAAAAATCAGAGGTCCTAG 2286 0.4405 MDSSMKTTLQYLWKQLLKHPSPASQVSDTLTSNMTRANGHRNETVIDIKKPVNFTGGLAFESLTYTVTKKKKVEGKWWNEEVDLLHNITGYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGRVSLDGATVSASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSFADKKQRVEKLIEQLGLSSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTNAHGVIEKVHDIARNGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPKDVTLHLSRMSRKVPKGENPIEHLIDVIQEYDQSEVGVEALAEFARTGMKPPRLSDMEELSLSLSQSSIAPSPSPSFNRGNGYEGKSQDFSYSSQKSRQQIVSDFDHSVRSAYHTSMSWSASNSAVFLKFTPSRLKNDQKVQKPASHASPGYYTYSNEILPATPTPHSSDYTVNENDYLTPTNGTPEHLGPKFANSYIGETWILMRRNFVNIRRTPELFLSRLMVLTFMGFMMATMFHNPKESLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIASLITHMPFLALQASAYAGIVWFALKLRGPFLYFLVVLFVSLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSQDIPAYWRWMNKISTMTYPYEGLLMNQYQTNDTFGRTDGIPVTGFDILNSLHIGTEGYKKRNNVLIMLGWAVLYRILFYLILRFASKNQRS* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01213 761 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524|GO:0016887
Rops1g01213 761 Gene3D - 66 305 IPR027417 -
Rops1g01213 761 FunFam ABC transporter G family member 6 68 306 - -
Rops1g01213 761 MobiDBLite consensus disorder prediction 351 389 - -
Rops1g01213 761 Pfam ABC-2 type transporter 493 698 IPR013525 GO:0016020|GO:0140359
Rops1g01213 761 Pfam ABC-2 type transporter 265 323 IPR043926 GO:0140359
Rops1g01213 761 CDD ABCG_EPDR 58 290 - -
Rops1g01213 761 MobiDBLite consensus disorder prediction 347 389 - -
Rops1g01213 761 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 308 IPR003439 GO:0005524
Rops1g01213 761 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 38 749 - -
Rops1g01213 761 Pfam ABC transporter 85 236 IPR003439 GO:0005524
Rops1g01213 761 SMART AAA_5 94 292 IPR003593 GO:0016887
Rops1g01213 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 296 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01213 Rops-Chr1 28016515 28020766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01213 45 322 Calmodulin-binding Proteins AT2G36910 26.502 6.63e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01213 K05681 - gmx:100804809 1161.75