Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01188 ATGAAGGTGGCAGGACAGAAGAGGAAACGGGTTTTCTCCTTGGCTATGCTGCTCTGCTTCTTGCTCGGTGCCTGTTCTGAGAACACCTCATTTAGACGAGGTTTAAAGGAGGCCAACAACCTGGAATCGACTCCTGCTAATTCTCCAGTCAAGCTGAATACAGAAAATGCTCGTCAGGTGGAGATTGACAACGGCATTGTGTCTGTCAAATTGTCAAAGCCCGAGGGCTTTATTATTGGCATATCATATCCTGGAATTGATAATGTACTTGACACTAAAAATAAAGAAGATGATAGAGGAATCCATGGGACAAGTTTCTCAGTCATAACAGCGGACGAGAATATAACGGAGGTTTCATTTTTGAGAACATGGACATCTTCCATGGGTGGTACAAGTGTCCCCGTAAATATAGACCAAAGGTATATAATGCGAAGAGGCGATTCCGGGTTTTATTCATACGTAATATTTGAGCGACCACCAGGATTCCCTGCTGCGACGGTTGATGACAAATACCAATACTCGAGTGAGAACCAAGACAACAGTGTTAATGGCTGGATTACCACAGATTCTCAAGCACACGTGGGTTTCTGGATCTTAACACCTAGTAATGAGTTCCGCAGTGCTGGGCCCCTTAAGCAAGACCTCACCTCTCATGTTGGTCCCACTCTCCTATCCATGTTAGTCAGCACCCACTATGCTGGCAAGGATGTAACCATGATATTTCAAGAAGGAGAGACATATACAAAGGTTTTCGGCCCTGTTTTTCTCTACCTTAACTCTGCACCAAGTAACGTTGATGTCCGGTCTCTGTGGTCAAATGCTGTACAACAGCTATCCAATGAAGTCAAAAGCTGGCCTTATGATTTCCTTCGATCAAAAGATTTCCTTCCACCCAATCAACGGGGAACAGTAACAGGAAGGTTACAAGTCCAAGACGGAGGACACAAACCTCAATATGCTAACAATGCTTATGTTGGGCTAGCTTTGCCTGGATATGCAGGATCTTGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGACCCAAATGGAAACTATGTAATAAAAAATATTGTACCTGGGCAATACAACTTGTATGCATGGGTTCCTGGCTTTATTGGAGATTACAGATATGATCCTATAATGAACATCACACCAGGATGCTCCATCAACTTGAGTTCACTTGTATATAGTCCTCCAAGAAATGGTCCTACTCTTTGGGAAATTGGCATCCCAGATCGCTCAGCTGCAGAATTCTATGTACCAGACCCTGACCCTACACTCGTGAACAACCTATACAAGAACGATACCACAAACAAGTTTAGGCAATACGGGTTGTGGCAACGTTACACTGATTTATATCCAAATCAAGATCTCGTTTACACGGTTGGTGTTAGTGACTACAAAAAGGATTGGTTTTTCGCTCATGTTACCAGGAACACTAATAATACATACCAGCCAACCACATGGCAGATTATATTTGAACTTCCAAATAATACGATAAATGGAAACTACACACTACAATTGGCCTTGGCAAGCGCCTCTTATTCTGAAGTGCAGGTTTGGTTCAATGACCCGAGTGCAAATCGTCCCTACTTCACAACAAGGCTAATAGGCAGCGATAATGTTATACCAAGGCACGGTATCCATGGATTGTACGGGCTGTATAGCATAGTGGTATCTGGTGATCTTTTGGTAAAAGGAAAGAATAACACCATGTATCTGAGGCAGTCAAGAGCCAAGGGTGCTTTCGAAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCTTCCAACTCCACCTACTTGA 1815 0.4314 MKVAGQKRKRVFSLAMLLCFLLGACSENTSFRRGLKEANNLESTPANSPVKLNTENARQVEIDNGIVSVKLSKPEGFIIGISYPGIDNVLDTKNKEDDRGIHGTSFSVITADENITEVSFLRTWTSSMGGTSVPVNIDQRYIMRRGDSGFYSYVIFERPPGFPAATVDDKYQYSSENQDNSVNGWITTDSQAHVGFWILTPSNEFRSAGPLKQDLTSHVGPTLLSMLVSTHYAGKDVTMIFQEGETYTKVFGPVFLYLNSAPSNVDVRSLWSNAVQQLSNEVKSWPYDFLRSKDFLPPNQRGTVTGRLQVQDGGHKPQYANNAYVGLALPGYAGSWQTESKGYQFWTRTDPNGNYVIKNIVPGQYNLYAWVPGFIGDYRYDPIMNITPGCSINLSSLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPDPTLVNNLYKNDTTNKFRQYGLWQRYTDLYPNQDLVYTVGVSDYKKDWFFAHVTRNTNNTYQPTTWQIIFELPNNTINGNYTLQLALASASYSEVQVWFNDPSANRPYFTTRLIGSDNVIPRHGIHGLYGLYSIVVSGDLLVKGKNNTMYLRQSRAKGAFEGVMYDYIRLESLPTPPT* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01188 604 SUPERFAMILY Galactose mutarotase-like 54 262 IPR011013 GO:0003824|GO:0005975|GO:0030246
Rops1g01188 604 Pfam Rhamnogalacturonate lyase family 47 169 IPR010325 -
Rops1g01188 604 CDD RGL4_M 300 397 IPR029413 -
Rops1g01188 604 Gene3D - 296 382 - -
Rops1g01188 604 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 166 599 - -
Rops1g01188 604 Pfam Polysaccharide lyase family 4, domain III 407 596 IPR029411 -
Rops1g01188 604 SUPERFAMILY Starch-binding domain-like 296 389 IPR013784 GO:0030246
Rops1g01188 604 FunFam Rhamnogalacturonate lyase B 297 394 - -
Rops1g01188 604 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Rops1g01188 604 SUPERFAMILY Galactose-binding domain-like 404 597 IPR008979 -
Rops1g01188 604 Gene3D - 162 275 IPR014718 GO:0030246
Rops1g01188 604 CDD RGL4_N 53 261 - -
Rops1g01188 604 CDD RGL4_C 409 597 - -
Rops1g01188 604 Gene3D - 405 597 - -
Rops1g01188 604 Pfam Polysaccharide lyase family 4, domain II 321 393 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01188 Rops-Chr1 27637557 27644105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01188 58 601 Polysaccharide Lyase AT1G09910 49.126 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01188 K18195 - gmx:100801633 768.844