Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01187 ATGGCGTCACAACATGAGGTGGAGCATCCAAGGAAGGCTTTCGGATGGGCAGCAAAGGACACATCTGGGGTTCTCTCCCCTTTCAAGTTCTCTAGAAGGGAAACGGGGGAGAAAGATGTGACATTCAAAGTACTGTACTGTGGGGTCTGTCACTCGGACCTACACATGCTGAAGAACGAGTGGGGCAGTTCCACTTACCCACTAGTACCTGGGCATGAGATTGCTGGTGTAGTGACAGAGGTGACTGTAATTAGTACATCTCCTAACAAAAAGAAGGAAGCCATTGAGAATTTAGGAGCTGACTCATTTGTGGTCAGCCGTGAGCAAGATCAGATGCAGGCTGCAATGGGTACCTTAGATGGTATCGTTGACACTGTTTCTGCAGTCCATCCTGTCTTGCCTTTGATTAGCCTGCTGAAGCTTAATGGTAAACTTGTCATGGTTGGTGTACCGGAGAAGCCTCTGGAACTACCAGTTTTTCCTTTAATTAAGGGGAGAAACATAATAGGTGGCAGCTGCATTGGAGGGTTGAAGGAGACCCAGGAAATGATTGATTTTGCTGCCAAACATGGCGTGAAACCTGATATTGAGGTTATTCCAATGGATTATGTGAACACTGCAATGGAGCGCCTCCTCAAAGCAGATGTGAAATATCGATTTGTTATTGACATTGGAAACACACTGAATGCAAGCTCTTAA 699 0.4607 MASQHEVEHPRKAFGWAAKDTSGVLSPFKFSRRETGEKDVTFKVLYCGVCHSDLHMLKNEWGSSTYPLVPGHEIAGVVTEVTVISTSPNKKKEAIENLGADSFVVSREQDQMQAAMGTLDGIVDTVSAVHPVLPLISLLKLNGKLVMVGVPEKPLELPVFPLIKGRNIIGGSCIGGLKETQEMIDFAAKHGVKPDIEVIPMDYVNTAMERLLKADVKYRFVIDIGNTLNASS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01187 232 FunFam Uncharacterized protein 2 72 - -
Rops1g01187 232 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 193 IPR036291 -
Rops1g01187 232 Pfam Alcohol dehydrogenase GroES-like domain 38 81 IPR013154 -
Rops1g01187 232 Gene3D - 195 222 - -
Rops1g01187 232 FunFam Cinnamyl alcohol dehydrogenase 74 194 - -
Rops1g01187 232 PANTHER ALDEHYDE REDUCTASE 80 227 IPR047109 GO:0016616
Rops1g01187 232 Pfam Zinc-binding dehydrogenase 75 188 IPR013149 -
Rops1g01187 232 SUPERFAMILY GroES-like 10 81 IPR011032 -
Rops1g01187 232 Gene3D - 2 82 - -
Rops1g01187 232 FunFam Putative cinnamyl alcohol dehydrogenase 6 195 224 - -
Rops1g01187 232 Gene3D - 83 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01187 Rops-Chr1 27628120 27631413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01187 11 81 Monolignol Biosynthesis Gene Families AT4G37990 83.099 2.36e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01187 K23232 - gmx:100809071 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01187 1 27628120 27631413 Rops1g01187 1 27628120 27631413 ECH