Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01183 ATGGCCTCTCAGGGTACCAATAGCATCCTTTGGCGCTTTGTTTTGGCTATTGTGATTGCCACCTTTTTCCCTCCTAACCTAAGTTCTGCCAAGCAATCCAAGATAATTGGCATGAAAATGAATGTGATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGGCATCGACCTCAACTAGCCACTTGTTCTGTGGGCTATGCTGGCAAGATGACAAATAACATTGGTAAGGACCTCATCCATTATGAAGTTACTGACCCCAGTGATGACCCCATAAACCCTAAACCTGGAACTTTGAGGTATGGAGCTTCAGTGATTCAAGGTAAAGTGTGGATCGCATTCCAAAGAGACATGCACATTAGACTCGTGAAACCCCTTCTCATTAGTAGTTTCACCATCGTTGATGGTCGAGGTGCCACCATCAACATTGCTGATAATGCATGCTTGATGATCTATAAGGCTACTAATGTAATCATCCATGGCATTCGGATTCATCATTGCAAAGCTCAATCCCCTGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCCTTTGGGCCAAGTAGATGGAGATGCAATCAGATTGGTCACAGCTTCAAAAATCTGGATTGATCATAATACGCTTTATGATTGCCAAGATGGTCTTCTTGATGTCACACGAGGTTCCACTGATGTGACTATATCCAACAACTGGTTCAGAGAACAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTGAGAGACCAGAACATGAAGGTTGCAGTTGTGTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGTTATGCACATGTAGCCAACAATCTTTACATGGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTTAAAAGTGAAGCTAACCTCTTCATCGCACCTACAGCTGGGAGAAAGGAGGTAACATGGAGAAAAGGTGATAATAAAAATGAGGATAGATGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCCTCCTTCGCGGTAACAATAGGAGGAAGTGTACCAAAGCCGAATTATAGCAAGGAACAAGGGGGGAAGATAATAGCTGGTAGTGGAATTGGAGGGATAAAGGAGACCCACGAGATGATTGATTTTGCAGCAGAACACAATGTAACACCAGACATTGAGGTCATTCCTATTGATTATGTCAACACAGCAATGGAGCGACTCCTTAAAGCAGATGTAAAATATCGATTCGTGATTGACATTGGAAACACACTTAAACCAAGCTCTTAA 1296 0.4344 MASQGTNSILWRFVLAIVIATFFPPNLSSAKQSKIIGMKMNVIDRCWRLNPEWRRHRPQLATCSVGYAGKMTNNIGKDLIHYEVTDPSDDPINPKPGTLRYGASVIQGKVWIAFQRDMHIRLVKPLLISSFTIVDGRGATINIADNACLMIYKATNVIIHGIRIHHCKAQSPGMVMGPNGKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGYVRDQNMKVAVVYNHFGPNCNQRMPRIRHGYAHVANNLYMGWVQYAIGGSMGPSLKSEANLFIAPTAGRKEVTWRKGDNKNEDRWEFHSVRDAFENGASFAVTIGGSVPKPNYSKEQGGKIIAGSGIGGIKETHEMIDFAAEHNVTPDIEVIPIDYVNTAMERLLKADVKYRFVIDIGNTLKPSS* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01183 431 Gene3D - 376 430 - -
Rops1g01183 431 Gene3D - 40 375 IPR012334 -
Rops1g01183 431 Pfam Pectate lyase 132 308 IPR002022 -
Rops1g01183 431 FunFam Putative cinnamyl alcohol dehydrogenase 6 394 423 - -
Rops1g01183 431 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Rops1g01183 431 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Rops1g01183 431 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Rops1g01183 431 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Rops1g01183 431 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Rops1g01183 431 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Rops1g01183 431 PANTHER PECTATE LYASE 18-RELATED 37 364 IPR045032 GO:0030570
Rops1g01183 431 SMART amb_all 117 314 IPR002022 -
Rops1g01183 431 SUPERFAMILY Pectin lyase-like 40 347 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01183 Rops-Chr1 27560190 27565445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01183 71 323 Polysaccharide Lyase AT5G09280 71.542 4.65e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01183 K01728 - gmx:100780437 659.833