Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01182 ATGGCCTCTCAGGGTACCAATAGCATCCTTTGGCGCTTTGTTTTGGCTATTGTGATTGCCACCTTTTTCCCTCCTAACCTAAGTTCTGCCAAGCAATCCAAGATAATTGGCATGAAAATGAATGTGATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGGCATCGACCTCAACTAGCCACTTGTTCTGTGGGCTATGCTGGCAAGATGACAAATAACATTGGTAAGGACCTCATCCATTATGAAGTTACTGACCCCAGTGATGACCCCATAAACCCTAAACCTGGAACTTTGAGGTATGGAGCTTCAGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAGACTCGTGAAACCCCTTCTCATTAGTAGTTTCACCACCGTTGATGGTCGAGGCGCCACCATCAACATTGCTGATAATGCATGCTTGATGATCTATAAGGCTACTAATGTAATCATCCATGGCATTCGGATTCATCATTGCAAAGCTCAATCCCCTGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCCTTTGGGCCAAGTAGATGGAGATGCAATCAGATTGGTCACAGCTTCAAAAATCTGGATTGATCATAATACGCTTTATGATTGCCAAGATGGTCTTCTTGATGTCACACGAGGTTCCACTGATGTGACTATATCCAACAACTGGTTCAGAGAACAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTGAGAGACCAGAACATGAAGGTTGCAGTTGTGTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGTTATGCACATGTAGCCAACAATCTTTACATGGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTTAAAAGTGAAGCTAACCTCTTCATCGCACCTACAGCTGGGAGAAAGGAGTGGGTGCCCAATGCGAGCCAAGCGAGAATGGAGTCAGGGGACAAAGGGGAACACATGTCGAGGGCTCCAGGGGTGATGGCTCGGGATAAAAATGTTAATTGTTTGAGTGGTGAGGTCAGTTTTCAACGCAAGGAGCAGCCTTCAAGTAAATATGGTGCTGGGCTTTCAAAGTCAGACGGGCTTGCATATAACGCAAAAATGCTGAGTCCAGTTAAGTCGTGTCCTGTGGGCCTTGATAGTTCGGTCCAATCTCTTAACCCAACCAGTTTGACTTCCCCCCTGGGCTCCACGTCGTGTGGTGTACAAAAAAGTGTAGGGGGTTTGGGTCTCCAATCTGAAGGCTCAATTCAAATCCTTCTTCCCTGCATAAATCAAGGTTGTTGTAGTATTGAAAAGGGTGGGCCAACAATAAATGAAGGAATGGAAGAGGGCCGGCCCATGGATCATTTGGGAGACAAAGGTATCCATATCTTGGCCGGCAGAGTAAGTGAGGGGGAAGATCAACGTGCCCCTTCTAGAGAGTGCAAAGTGAGGTCGTGTTCTAGAAGAAGCAATAAGGCTAGAGCTGGAAGAGGCTTAGCTCACATGGGAATCGCTGAGAGGGATCCGCATGATGAAAACGTGGCGTCTTTGTGTGATGGGTATTCTTTCTCTCCAGGTTCTCCTATTTTTAGGGTTCTTTGGAAGGATGCTGTCCCTAACAAAATCATTGCTTTCTCTTGGAGATGTACCCCTTCCGAACCTGTCGCTTGTGTTACGTTGGATCGGTGGATGAGTGGCTTTGGTGGTCTGGCAATTGTCTTTGCTGCCTTGCCTTTGGTTCCTTCTTAG 1782 0.4652 MASQGTNSILWRFVLAIVIATFFPPNLSSAKQSKIIGMKMNVIDRCWRLNPEWRRHRPQLATCSVGYAGKMTNNIGKDLIHYEVTDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMHIRLVKPLLISSFTTVDGRGATINIADNACLMIYKATNVIIHGIRIHHCKAQSPGMVMGPNGKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGYVRDQNMKVAVVYNHFGPNCNQRMPRIRHGYAHVANNLYMGWVQYAIGGSMGPSLKSEANLFIAPTAGRKEWVPNASQARMESGDKGEHMSRAPGVMARDKNVNCLSGEVSFQRKEQPSSKYGAGLSKSDGLAYNAKMLSPVKSCPVGLDSSVQSLNPTSLTSPLGSTSCGVQKSVGGLGLQSEGSIQILLPCINQGCCSIEKGGPTINEGMEEGRPMDHLGDKGIHILAGRVSEGEDQRAPSRECKVRSCSRRSNKARAGRGLAHMGIAERDPHDENVASLCDGYSFSPGSPIFRVLWKDAVPNKIIAFSWRCTPSEPVACVTLDRWMSGFGGLAIVFAALPLVPS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01182 593 Gene3D - 40 376 IPR012334 -
Rops1g01182 593 SUPERFAMILY Pectin lyase-like 31 319 IPR011050 -
Rops1g01182 593 Pfam Pectate lyase 128 308 IPR002022 -
Rops1g01182 593 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Rops1g01182 593 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Rops1g01182 593 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Rops1g01182 593 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Rops1g01182 593 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Rops1g01182 593 PANTHER PECTATE LYASE 18-RELATED 37 355 IPR045032 GO:0030570
Rops1g01182 593 SMART amb_all 117 314 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01182 Rops-Chr1 27540916 27548596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01182 71 317 Polysaccharide Lyase AT5G09280 72.874 1.30e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01182 K01728 - gmx:100780437 587.03