Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01139 ATGTCTGACGAGGAACACCACTTTGAGTCCAAAGCTGATGCGGGTGCATCTAAGACATATCCGCAGCAAGCTGGAACCATTCGCAAAAATGGTTACATTGTAATCAAGAACAGGCCCTGCAAGGTAGTGGAGGTTTCAACTTCAAAAACTGGCAAGCATGGACACGCGAAGTGTCACTTTGTTGGTATTGACATCTTCACAGGCAAAAAGCTTGAAGATATTGTTCCATCTTCCCATAACTGTGATGTCCCTCATGTCAATCGCACTGACTACCAGCTCATTGATATCTCAGAGGATGGATTTCTGAGTCTTCTGACTGATTCTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGATTTGCTGAGGGTAAAGATCTGGTTGTGTCTGTTATGTCTGCCATGGGTGAGGAGCAGATTTGTGCTCTTAAGGACATTGGCCCCAAGTAA 480 0.4521 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFLSLLTDSGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01139 159 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Rops1g01139 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Rops1g01139 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Rops1g01139 159 Gene3D - 1 85 IPR014722 -
Rops1g01139 159 CDD S1_eIF5A 86 156 - -
Rops1g01139 159 Gene3D - 86 158 IPR012340 -
Rops1g01139 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Rops1g01139 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Rops1g01139 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Rops1g01139 159 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g01139 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Rops1g01139 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Rops1g01139 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Rops1g01139 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01139 Rops-Chr1 26705524 26707716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01139 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.308 1.11e-103 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01139 K03263 K02180 tcc:18604761 321.627