Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01129 ATGGAAGAGACAGAGGAGTCCACCAATGCTAACCAGAAATTCACCACCAAAAGAAGGAGCTTTAGGAGTGGAGCCAACTCTCATGAACATCATCATCATCACTATCAACACCATCAGTTGCTGCAATACTCAAGTCAACTTGGGTTCTGCAATAACCAGAACAAGTATCAAAGGTACTACCCAGCACTTCTTCCTCTACCTTCTCTTATACCTCTACAACAACTACCTTTGACTCCACCCTTCCCTCAAAACCAGAGCATCAAATCAAAAACCCATTTACAGAAACCTCCATGCAAACTTAATAGTTCTCCTTCCTCAGATTACAAGCTCTCTGAACCACCACATGTTCCTGCTCCAAGGGAACTTCAGCAGCAAACTAAGGCATCCTTTAAAGGAGATGATGGGAAGAAACTCATTCCAGCAAGGAAGCCACAGGCAGTGATTGTTGCAAGGAGGCCAGACTCTGGTGGCAAAGAAGGTTCTGTGATCTCTCTGCTTGCCAACCACTTCTTGGTGCAGTTTGATTCATCACAAAAAATATACCATTACAATGTTGAAATTACTCCTCATCCATCCAAGGATGTGGCCAGAGTAATCAAACAGAAATTGGTAAATAACAATTCTGCTGTGCTCTCGGGTGCTATGCCAGCATATGATGGTAGAAAGAATCTTTACAGCCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAATCAACATCACCTTATGGAGCAATGTATGAGTTGAAAGAGAAGCATGAACAGCTTAAACTGTTTCGGATAAATATCAAACTAGTCTCAAAGATTAATGGGAAGGAGTTGACTAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTACCACAGGATTATCTACATGCTTTGGATGTAGTTCTGAGGGAAAGTCCAACTGAGAAATGTATACCAGTAGGAAGGTCATTCTATTCAAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTGAGACCAACCCAACAAGGACTTGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATTGGAGTGATTTCATACTTGCAGAAACGTCTTGAATTTCTTCGAGACCTTTCTCAAAGGAAAACAACTCAATTAACTGGTGAAGAAAGGAAGGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATATCGTGTTTATGGCTTAACTGAAGATACTACTGAAAATCTTTGGTTTGCTGACAGAGATGGAAAGAATCTGAGGCTTGTGAATTACTTTAAAGATCACTATAACTATGACATACAATTCAGAAAATTGCCATGCTTGCAAATTAGTAGAAGTAAACCTTGTTATCTCCCTATGGAGCTATGTGTGATATGTGAAGGCCAGAAATTCCTTGGGAAACTGTCTGATGATCAGACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCAGGAGAACGAAAAACCATCATTGAAGGAGTCATGAGAGGATCTGTTGGGCCTACCAGTGGTGACCAGGAAAGAGAATTCAAACTCCAGGTCTCAAGAGAAATGACAAGGTTGACTGGGAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTGACTCCTTCACGGCATGACCGCCAGTGGAACCTTCTGGATGGCCATGTATTTGAAGGAACTACAATTGAAAGGTGGGCACTAATAAGTTTTGGGGGCACACCTGAACAGAAGTCTAATATCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAATTGGGCATTTTTCTTAACAAGAACACAGTTATTAGTCCCCAGTTTGAATCGAGCCAGGTCCTTAACAATGTCACACTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGGCTGCCTTGAACAATCTTCAACTTCTTATTTGTATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCTGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCCTGTACCCAAATCTAAGCAAATTAAGTTCACAATTTTTGGCTAATTTGGCCCTCAAAATCAATGCCAAACTTGGTGGATGCACAGTTGCCCTTTACAATTCATTGCCTTCTCAAATACCACGCCTCTTTCGGATTGATGAGCCAGTTATATTCATGGGAGCGGATGTGACACATCCTCATCCTCTTGATGATTTCAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAGCTGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACACAGACAAGAAATTATCCAGGATCTTGGTGCTATGGTGGGGGAATTGCTTGATGATTTTTATCAGGAAGTAGAGAAACTCCCCAACAGAATAATTTTCTTCAGAGATGGAGTTAGTGAAACTCAATTTTATAAAGTGCTGCAAGAGGAACTTCAATCCATCAGGAATGCATGTTCAAGGTTTCCTGATTATAAACCTTTAATCACTTTTGCAGTTGTGCAGAAGAGGCATCACACAAGGTTGTTTCCCTTTGAACCTGACCAGTCTTCCCCTCAAAACCATTCTCTATATGAAAATATTCCTCCAGGGACTGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGACTTCTATCTTTGTAGCCATTGGGGTGTGAAAGGAACAAGCAGGCCAACTCATTACCATGTGTTATGGGATGAAAACCAGTTTACTTCTGATGAACTGCAGAAGCTGGTTTACAATTTATGCTATACTTTTGTTAGGTGTACCAAGCCAATTTCTTTGGTTCCTCCTGTATATTATGCACATTTAGCTGCATACAGAGGCAGACTCTACCTTGAGAGATCAGAATCCTTAGGTTTGTTCAGGAGTTCATCTACATTATCCAGAGCTGCTCCTCCAAAAACAGCACCTCTACCTAAACTTAGTGAAAACATAAGGAAGCTGATGTTCTACTGCTAG 3048 0.4137 MEETEESTNANQKFTTKRRSFRSGANSHEHHHHHYQHHQLLQYSSQLGFCNNQNKYQRYYPALLPLPSLIPLQQLPLTPPFPQNQSIKSKTHLQKPPCKLNSSPSSDYKLSEPPHVPAPRELQQQTKASFKGDDGKKLIPARKPQAVIVARRPDSGGKEGSVISLLANHFLVQFDSSQKIYHYNVEITPHPSKDVARVIKQKLVNNNSAVLSGAMPAYDGRKNLYSPIEFQNDKLEFYISLPIPTSKSTSPYGAMYELKEKHEQLKLFRINIKLVSKINGKELTNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVISYLQKRLEFLRDLSQRKTTQLTGEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEDTTENLWFADRDGKNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMRGSVGPTSGDQEREFKLQVSREMTRLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLNKNTVISPQFESSQVLNNVTLLESKLKRIQRAALNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKLGGCTVALYNSLPSQIPRLFRIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFYKVLQEELQSIRNACSRFPDYKPLITFAVVQKRHHTRLFPFEPDQSSPQNHSLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPVYYAHLAAYRGRLYLERSESLGLFRSSSTLSRAAPPKTAPLPKLSENIRKLMFYC* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01129 1015 FunFam Protein argonaute 7 365 491 - -
Rops1g01129 1015 SUPERFAMILY PAZ domain 365 523 IPR036085 GO:0005515
Rops1g01129 1015 SUPERFAMILY Ribonuclease H-like 652 976 IPR012337 -
Rops1g01129 1015 Pfam Argonaute linker 1 domain 319 368 IPR014811 -
Rops1g01129 1015 SMART DUF1785_2 318 370 IPR014811 -
Rops1g01129 1015 Pfam Piwi domain 667 973 IPR003165 GO:0003676
Rops1g01129 1015 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 141 978 - -
Rops1g01129 1015 MobiDBLite consensus disorder prediction 81 109 - -
Rops1g01129 1015 SMART Piwi_a_2 666 976 IPR003165 GO:0003676
Rops1g01129 1015 ProSiteProfiles Piwi domain profile. 666 976 IPR003165 GO:0003676
Rops1g01129 1015 MobiDBLite consensus disorder prediction 1 38 - -
Rops1g01129 1015 Pfam N-terminal domain of argonaute 163 309 IPR032474 -
Rops1g01129 1015 CDD PAZ_argonaute_like 381 486 - -
Rops1g01129 1015 Gene3D - 552 728 - -
Rops1g01129 1015 CDD Piwi_ago-like 535 975 IPR045246 -
Rops1g01129 1015 Pfam PAZ domain 381 503 IPR003100 GO:0005515
Rops1g01129 1015 Gene3D - 738 1015 IPR036397 GO:0003676
Rops1g01129 1015 MobiDBLite consensus disorder prediction 81 137 - -
Rops1g01129 1015 SMART PAZ_2_a_3 378 509 IPR003100 GO:0005515
Rops1g01129 1015 FunFam protein argonaute 10-like 735 1015 - -
Rops1g01129 1015 Gene3D paz domain 364 491 - -
Rops1g01129 1015 FunFam Argonaute 10 552 728 - -
Rops1g01129 1015 MobiDBLite consensus disorder prediction 24 38 - -
Rops1g01129 1015 ProSiteProfiles PAZ domain profile. 378 487 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01129 Rops-Chr1 26558540 26563801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01129 105 1015 Eukaryotic Initiation Factors Gene Family AT1G48410 40.985 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01129 K11593 - gmx:100797755 1869.36