Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01118 ATGAGCTGTGAGAAAGTAGGGTTGAAGAAAGGACCATGGACTGCAGAAGAAGACAAGAAGCTTGTAGCTTATGTTGAAAAACATGGCCATGGAAACTGGCGTTCATTGCCAGCCAAAGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGACTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGGAACTTCACCTTGGAGGAAGACCGCACTATTATTCAACTCCATGCTCTTCTTGGAAACAAATGGTCAATCATAGCAGCTCACTTGCCCAAGAGAACAGACAATGAGATCAAGAACTATTGGAACACCCACATCAAGAAAAGGCTTATAAGAATGGGCATAGATCCCATTACCCACAAACCAAAAGCCAAAATCATTGAAGAATCCTATGGCACTGGCCAGTCCAAAGAGGCCATCAATATGAGCCACATGGTTCAATGGGAGAGTGCTAGACTTGAAGCTGAAGCTAGAGAATCCATGTTGCAGGTTGGATCCTCCCATACACCTCGGTTAATCATAAGCAAAATCCCAATTCAACCTTCAAGTTCATCAGAGTCACTATCCACCAAACACAATAGCACAGTGTATAACATGTGTGCTATCATGCTTGTCACAGATGACCACATAAGTAAGAAGCTTCCTGTGTCCACCCATATGGGACAAAGCACCAAAAGCTCAATCTCATATGAGGGTTATGGAAATATCATAGAAACTAGTAGTAGTCAAAAGATAATGGAAGGTTATGTGTCAAACTTGCAAGATGATGATATTATGGTGGCCGTGGAAGCATTTAGAGCAGCAAGACATGAGAGTTTTCCAGAAATGTTTGAAGGTACCACTGCCATGGAAGGTCTAATTAATGATGCATCTGAAAGATTTGGTGAAGATCCCAACTTTCAATTTTTGGAACAGCTTACTGAACTTGAATAA 939 0.4153 MSCEKVGLKKGPWTAEEDKKLVAYVEKHGHGNWRSLPAKAGLQRCGKSCRLRWINYLKPDIKRGNFTLEEDRTIIQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTHIKKRLIRMGIDPITHKPKAKIIEESYGTGQSKEAINMSHMVQWESARLEAEARESMLQVGSSHTPRLIISKIPIQPSSSSESLSTKHNSTVYNMCAIMLVTDDHISKKLPVSTHMGQSTKSSISYEGYGNIIETSSSQKIMEGYVSNLQDDDIMVAVEAFRAARHESFPEMFEGTTAMEGLINDASERFGEDPNFQFLEQLTELE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01118 312 CDD SANT 65 108 IPR001005 -
Rops1g01118 312 Gene3D - 9 62 - -
Rops1g01118 312 CDD SANT 12 57 IPR001005 -
Rops1g01118 312 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Rops1g01118 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 227 - -
Rops1g01118 312 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Rops1g01118 312 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Rops1g01118 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Rops1g01118 312 FunFam MYB transcription factor 64 125 - -
Rops1g01118 312 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Rops1g01118 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Rops1g01118 312 FunFam MYB-related transcription factor 9 62 - -
Rops1g01118 312 Gene3D - 65 112 - -
Rops1g01118 312 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Rops1g01118 312 SMART sant 9 59 IPR001005 -
Rops1g01118 312 SMART sant 62 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01118 Rops-Chr1 26223857 26225598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01118 3 160 MYB Transcription Factor Family AT3G01140 77.215 1.31e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01118 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01118 K09422 - gmx:100792464 368.237