Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01115 ATGAGCTGTGAGAAAGTAGGGTTGAAGAAAGGACCATGGACTGCAGAAGAAGACAAGAAGCTTGTAGCTTATGTTGAAAAACATGGCCATGGAAACTGGCGTTCATTGCCAGCCAAAGCTGGTCTTCAAAGATGTGGAAAGGGTTGCAGACTGAGGTGGATTAACTATCTCAAACCTGATATAAAAAGAGGGAACTTCACCTTGGAGGAAGACCGCACTATTATTCAACTCCATGCTCTTCTTGGAAACAAGTTGCCTCATCAAGTTTCTATTGGAACACTCTCATGGCTCTATTGTGCTGCTGGAGGTGCTACTGCGAAGAGGAAGAGTTTTCATGCTATGGTCTGTTTTAGGGGCTTGGACTGGTTTCTCATATGGTCAATCATAGCAGCTCACTTGCCCAAGAGAACAGACAATGAGATCAAGAACTATTGGAACACCCACATCAAGAAAAGGCTTATAAGAATGGGCATAGATCCCATTACCCACAAACCAAAAGCCAAAATCATTGAAGAATCCTATGGCACTGGCCAGTCCAAAGAGGCCATCAATATGAGCCACATGGTTCAATGGGAGAGTGCTAGACTTGAAGCTGAAGCTAGAGAATCCATGTTGCAGGTTGGATCCTCCCATACACCTCGGTTAATCATAAGCAAAATCCCAATTCAACCTTCAAGTTCATCAGAGTCACTATCCACCAAACACAATAGCACAGTGTATAACATGTGTGCTATCATGCTTGTCACAGATGACCACATAAGTAAGAAGCTTCCTGTGTCCACCCATATGGGACAAAGCACCAAAAGCTCAATCTCATATGAGGGTTATGGAAATATCATAGAAACTAGTAGTAGTCAAAAGATAATGGAAGGTTATGTGTCAAACTTGCAAGATGATGATATTATGGTGGACGTGGAAGCATTTAGAGCAGCAAGACATGAGAGTTTTCCAGAAATGTTTGAAGGTACCACTGCCATGGAAGGTCTGATTAATGATGCATCTGAAAGATTTGGTGAAGATCCCAACTTTCAATTTTTGGAACAGCTTACTGAACTTGAATAA 1062 0.4209 MSCEKVGLKKGPWTAEEDKKLVAYVEKHGHGNWRSLPAKAGLQRCGKGCRLRWINYLKPDIKRGNFTLEEDRTIIQLHALLGNKLPHQVSIGTLSWLYCAAGGATAKRKSFHAMVCFRGLDWFLIWSIIAAHLPKRTDNEIKNYWNTHIKKRLIRMGIDPITHKPKAKIIEESYGTGQSKEAINMSHMVQWESARLEAEARESMLQVGSSHTPRLIISKIPIQPSSSSESLSTKHNSTVYNMCAIMLVTDDHISKKLPVSTHMGQSTKSSISYEGYGNIIETSSSQKIMEGYVSNLQDDDIMVDVEAFRAARHESFPEMFEGTTAMEGLINDASERFGEDPNFQFLEQLTELE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01115 353 Gene3D - 9 62 - -
Rops1g01115 353 FunFam MYB-related transcription factor 9 62 - -
Rops1g01115 353 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Rops1g01115 353 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Rops1g01115 353 Pfam Myb-like DNA-binding domain 63 148 IPR001005 -
Rops1g01115 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Rops1g01115 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 153 IPR017930 -
Rops1g01115 353 SUPERFAMILY Homeodomain-like 11 84 IPR009057 -
Rops1g01115 353 CDD SANT 12 57 IPR001005 -
Rops1g01115 353 ProSiteProfiles Myb-like domain profile. 58 149 IPR001005 -
Rops1g01115 353 SMART sant 62 151 IPR001005 -
Rops1g01115 353 SMART sant 9 59 IPR001005 -
Rops1g01115 353 SUPERFAMILY Homeodomain-like 112 157 IPR009057 -
Rops1g01115 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 268 - -
Rops1g01115 353 CDD SANT 65 149 IPR001005 -
Rops1g01115 353 Gene3D - 65 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01115 Rops-Chr1 26068815 26070943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01115 3 201 MYB Transcription Factor Family AT3G01140 60.804 5.98e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01115 Myb_DNA-binding 9.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01115 K09422 - gmx:100792464 344.354