Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01114 ATGGAAGGTTATGTGTTAAACTTGCAAGATGATGACATTATGGTGGCCGTGGAAGCATTTAGAACAGCTAGATGTGAGAGTGTTCAAGAATTGTTTGATAGTGTCACTGCCATGGAAGGTCTAATTATTGATTCCTCTGAAGGATTTGGTGAAAAGTATGGAAATGGGAACAACAATTTTGGTGCCGACTTTCAATGGTTCCCTCTCTGGCCATTAAGATGGTCAATCATAGCAGCTCACTTGCCCAAGAGAACAGACAATGAGATCAAGAACTATTGGAACACCCACATCAAGAAAAGGCTTATAAGAATGGGCATAGATCCCATTACCCACAAACCAAAAGCCAAAATCATTGAAGAATCCTATGGCACTGGCCAGTCCAAAGAGGCCATCAATATGAGCCACATGGTTCAATGGGAGAGTGCTAGACTTGAAGCTGAAGCTAGAGAATCCATGTTGCAGGTTGGATCCTCCCATACACCTCGGTTAATCATAAGCAAAATCCCAATTCAACCTTCAAGTTCATCAGAGTCACTATCCACCAAACACAATAGCACAGTGTATAACATGTGTGCTATCATGCTTGTCACAGATGACCACATAAGTAAGAAGCTTCCTGTGTCCACCCATATGGGACAAAGCACCAAAAGCTCAATCTCATATGAGGGTTATGGAAATATCATAGAAACTAGTAGTAGTCAAAAGATAATGGAAGGTTATGTGTCAAACTTGCAAGATGATGATATTATGGTGGACGTGGAAGCATTTAGAGCAGCAAGACATGAGAGTTTTCCAGAAATGTTTGAAGGTACCACTGCCATGGAAGGTCTAATTAATGATGCATCTGAAAGATTTGGTGAAGATCCCAACTTTCAATTTTTGGAACAGCTTACTGAACTTGAATAA 906 0.4062 MEGYVLNLQDDDIMVAVEAFRTARCESVQELFDSVTAMEGLIIDSSEGFGEKYGNGNNNFGADFQWFPLWPLRWSIIAAHLPKRTDNEIKNYWNTHIKKRLIRMGIDPITHKPKAKIIEESYGTGQSKEAINMSHMVQWESARLEAEARESMLQVGSSHTPRLIISKIPIQPSSSSESLSTKHNSTVYNMCAIMLVTDDHISKKLPVSTHMGQSTKSSISYEGYGNIIETSSSQKIMEGYVSNLQDDDIMVDVEAFRAARHESFPEMFEGTTAMEGLINDASERFGEDPNFQFLEQLTELE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01114 301 SUPERFAMILY Homeodomain-like 71 105 IPR009057 -
Rops1g01114 301 PANTHER F14D16.11-RELATED 73 222 - -
Rops1g01114 301 Gene3D - 40 101 - -
Rops1g01114 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 101 IPR017930 -
Rops1g01114 301 CDD SANT 73 97 IPR001005 -
Rops1g01114 301 ProSiteProfiles Myb-like domain profile. 73 97 IPR001005 -
Rops1g01114 301 Pfam Myb-like DNA-binding domain 73 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01114 Rops-Chr1 26033260 26041323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01114 73 149 MYB Transcription Factor Family AT3G01140 75.325 7.67e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops1g01114 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01114 K09422 - gmx:100792464 202.216