Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01112 ATGGAGGGCAGAACAAGCTCTGAACTCCCACCTGGTTTCAGGTTCCACCCAACTGATGAAGAACTAATTGTGTATTACCTTTGTAACCAAGCCACATCACAACCTTGCCCTGCATCTATCATCTCAGAAGTTGATATCTATAAATTTGATCCATGGGAATTACCTGATAAAACAGACTTTGGAGAAAATGAATGGTATTTCTTTAGTCCAAGGGAGAGGAAATATCCAAATGGGGTGAGGCCTAATAGATCAACTGTGTCAGGGTATTGGAAAGCTACAGGTACAGACAAAGCAATCTATAGTGGGTCTAAGCATATTGGGGTGAAGAAAACTTTGGTCTTTTACAAGGGTAGGCCACCAAAGGGCCTCAAGACAGATTGGATTATGCATGAATATAGATTAATTGGATCAAGAAGACAAACCAATAGGCAAATTGGGTCCATGAGGCTGGATGACTGGGTCTTATGTAGGATCTATAAGAAGAAGAACATGGGAAGATCATTGGAGATAAAAGAGGACTACCCAACAGCCCAAATCAGCCTGACAGCAGCAAATGATGATGAAAGTGAACAGAAAGTGATGAAATTTCCAAGGACTTTTTCCCTTACTAATCTCTTGGATATGGATTACTTGGGTCCAATATCACAGATATTATCTGATGGATCATATAACTCAACCTTTGATTTTCAAATTAACACTGCACATGGTGGAACAATAGACCCCTTTGTAAAACCACAGCTAGTTGAAATGCCCATTAACCCCTTTGCAGCTGATTCAGAAAAGTACCAAGTGAAACAGAATAGCAGTGTGAACCCCACGATATTTGTGAACCAAGTTTATGACCATAGAGGATAA 855 0.4012 MEGRTSSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIISEVDIYKFDPWELPDKTDFGENEWYFFSPRERKYPNGVRPNRSTVSGYWKATGTDKAIYSGSKHIGVKKTLVFYKGRPPKGLKTDWIMHEYRLIGSRRQTNRQIGSMRLDDWVLCRIYKKKNMGRSLEIKEDYPTAQISLTAANDDESEQKVMKFPRTFSLTNLLDMDYLGPISQILSDGSYNSTFDFQINTAHGGTIDPFVKPQLVEMPINPFAADSEKYQVKQNSSVNPTIFVNQVYDHRG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01112 284 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Rops1g01112 284 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 185 - -
Rops1g01112 284 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Rops1g01112 284 FunFam NAC transcription factor 18 165 - -
Rops1g01112 284 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Rops1g01112 284 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01112 Rops-Chr1 25977867 25979186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01112 1 217 NAC Transcription Factor Family AT1G69490 65.789 1.82e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops1g01112 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01112 - - gmx:732552 503.827