Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01104 ATGGGGAGGGTAAAACTAAAGATAAAGAGGCTGGAGAACACCAATGGACGTCAAGCAACCTATGCTAAAAGGAAGAATGGAATCATGAAGAAAGCTACTGAGTTATCTATATTGTGTGATATAGATATTATACTTCTCATGTTTTCACCAGGTGGAAAGCCTTCATTATGCAGGGGGAGACGCAGTAACTTTGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCACAGGAAAGGGCAAAGAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGATTTTTTGGGTACAAGTCGTCAAACTGTTGAGGACCTAAATGATCAAGTCAGGCAATTACAGACTCGTATTTCAGAAATACAGAAGAGACTAAGTGATTGGACTAACCCTGATAAAGTTAGTAGTGTGGAAGAATTGGGACAAATGGAAAATTCAATTAAGGAATCTCTTAATCAAATTCGAACTCACAAGGAAAATATACAAAAGCAACAACTTGTATCACTGCAATGCAATAACCAGCTCAATGAAATGCATGTTCCCTATCGAATGAGTGCTCAACAGCATCTCCAACCACTATCATGGATTGCTAATGGTGACAGCCACAATATGGTTCTACCTGAGGACTCAAATTTGCTTCTCCACAAGGATGTAGAGGGCTCAGCAAACTCTTCTTTTGGGAGTTATTATCTTGGCTCAAGTACCAAAACAGATATTTCCAATTCAGGGCAAGAAAATGGTGTCCTCAGTGACTTGACCAGTACTGCTCCTATGAGACTACAATTAAATGGGCAGTTTCCATACATGCCAAACAATTTTAACTTACTAAATGATATGAAGCTTCAACCAAATGTAGAGATGAACCCACATGAAAACCATGTAGATTATCAAGTTAATGGGGGAAGCTTTGAAGCACCTAGACCAGGGTATGACTCTAACAACCATGGATGGACTTCAACATCAGGGCCTTGTGCTGTTACTATGTTTGATGAACATTTGTATGCTCAGCCAAGTTTTCCTCAAGTGCACTTTGGCTTCACATAG 1074 0.3929 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPGGKPSLCRGRRSNFEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGTSRQTVEDLNDQVRQLQTRISEIQKRLSDWTNPDKVSSVEELGQMENSIKESLNQIRTHKENIQKQQLVSLQCNNQLNEMHVPYRMSAQQHLQPLSWIANGDSHNMVLPEDSNLLLHKDVEGSANSSFGSYYLGSSTKTDISNSGQENGVLSDLTSTAPMRLQLNGQFPYMPNNFNLLNDMKLQPNVEMNPHENHVDYQVNGGSFEAPRPGYDSNNHGWTSTSGPCAVTMFDEHLYAQPSFPQVHFGFT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01104 357 Coils Coil 77 97 - -
Rops1g01104 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 202 - -
Rops1g01104 357 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Rops1g01104 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Rops1g01104 357 CDD MADS 2 54 - -
Rops1g01104 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops1g01104 357 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Rops1g01104 357 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Rops1g01104 357 Coils Coil 150 170 - -
Rops1g01104 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops1g01104 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops1g01104 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops1g01104 357 Coils Coil 107 134 - -
Rops1g01104 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01104 Rops-Chr1 25856660 25860550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01104 1 350 Type I MADS-box Gene Family AT2G03060 48.837 9.88e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops1g01104 SRF-TF 5.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01104 - - lang:109356063 582.022