Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01101 ATGGCTAGCAAGTGTTTTATGATCTCTTCACAAGAAAACCAACAAAATGGCCTCAGTTGTTACCCTATTCCAACTCCTTCTTCTTCTTCCTCTTCATTTCCATCTCCTTCAATGGGAATGGTATATGCAGACTTTGGATCTCTTTCTCTTAGCTCTAACTTCTCATCTCAAGAGAGTAACTACGCCTGCAAGAGTTCTATGATGGAGAATGGGGGTACAAGCTGGAGTTTTCCATTTATGAAGGAGTTCCTTTCAAGAAGCTTTGAAGAACACAATAATATAGATGATTTGGAGGGCAAAAGTTCTGATTGCAGTGATGGGGTTGGGGAAAACAGTGAGAAAATAAACCATAATGCCAACTTCAATGAAGAGAACCCTAATGAGAATCCAGCCAGTGGCAAAGAGGTAGATAGTGGACAGTCAAAACTATGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTGAAGGAACTTGTAGCTATTTATGGTCCTCAAAACTGGAACCTGATAGCTGAGAAGTTGGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGATGGTTCAACCAGTTGGACCCAAGGATTAACAGGAGAGCTTTCACTGAGGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCTGTCAAGAATCATTGGCATGTTATAATGGCTAGGAAGTACAGAGAACAATCCAATGCTCATAGGAGGAGAAGATTGAGCCAATCTGTTTACAGAAGAATGGAGCAAAATCCAAGCTTTGTTTGCAGAGATACCACAACTGAAACAGAACCATCACCCTATTTTCTCAATGGAGTCCTCAGCAATAGTAATATGGCTATTTTCCCCTATGGTGCATCCTTCCATGGTGGGGTTGAGTATGGATTAAATGGTTCAACCAACATGACCGAAACAATGTCAAGAAGTGAACAGGCCCCCCCACATGCTGGCTTGTATGCTCAACAGGCACCATTTGATTTCTTCTCTGGTGCTACAAGTAATGACATGGTGGGAGAGTCTCTGAGTCAGATCAGATGCTGGGACAGGACTAGTGATGAATATCATCATCATCAACAACTATCTGGTTTCTACCCTCATTATCCCCAACAATATCTGATGGCAATGCAACAACCAAACAATCACAATTTTTACAGTTTCTCAAATTCCTCAGCATCAATAACAACACCCCATGTTTCAGCCAGGGAACCATCATCATCATCTGATGCAGTAAACAGAGATAAAGTTCTGATTAGTGACACCCCAGATGCTGTTCCTCCACCTCCATTTTTTGACTTCCTCGGAGTAGGAGTCACATGA 1374 0.4243 MASKCFMISSQENQQNGLSCYPIPTPSSSSSSFPSPSMGMVYADFGSLSLSSNFSSQESNYACKSSMMENGGTSWSFPFMKEFLSRSFEEHNNIDDLEGKSSDCSDGVGENSEKINHNANFNEENPNENPASGKEVDSGQSKLCARGHWRPAEDSKLKELVAIYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAHRRRRLSQSVYRRMEQNPSFVCRDTTTETEPSPYFLNGVLSNSNMAIFPYGASFHGGVEYGLNGSTNMTETMSRSEQAPPHAGLYAQQAPFDFFSGATSNDMVGESLSQIRCWDRTSDEYHHHQQLSGFYPHYPQQYLMAMQQPNNHNFYSFSNSSASITTPHVSAREPSSSSDAVNRDKVLISDTPDAVPPPPFFDFLGVGVT* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01101 457 MobiDBLite consensus disorder prediction 105 136 - -
Rops1g01101 457 SUPERFAMILY Homeodomain-like 146 239 IPR009057 -
Rops1g01101 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 247 IPR017930 -
Rops1g01101 457 FunFam MYB transcription factor 146 197 - -
Rops1g01101 457 FunFam MYB transcription factor 199 270 - -
Rops1g01101 457 Gene3D - 199 270 - -
Rops1g01101 457 MobiDBLite consensus disorder prediction 95 143 - -
Rops1g01101 457 SMART sant 145 194 IPR001005 -
Rops1g01101 457 SMART sant 197 245 IPR001005 -
Rops1g01101 457 Pfam Myb-like DNA-binding domain 146 192 IPR001005 -
Rops1g01101 457 Pfam Myb-like DNA-binding domain 198 241 IPR001005 -
Rops1g01101 457 Gene3D - 146 197 - -
Rops1g01101 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 192 IPR017930 -
Rops1g01101 457 CDD SANT 149 190 IPR001005 -
Rops1g01101 457 CDD SANT 200 240 IPR001005 -
Rops1g01101 457 ProSiteProfiles Myb-like domain profile. 193 243 IPR001005 -
Rops1g01101 457 ProSiteProfiles Myb-like domain profile. 146 192 IPR001005 -
Rops1g01101 457 PANTHER MYB PROTEIN-RELATED 130 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01101 Rops-Chr1 25805450 25807272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01101 144 271 MYB Transcription Factor Family AT1G69560 82.812 2.89e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01101 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01101 K09422 - vvi:100253313 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01101 1 25805450 25807272 Rops1g01101 1 25805450 25807272 ECH