Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01097 ATGCATTTTGTTCTTTCCACTGATGCAAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGATTCGTTGAGGCCACTAATCAGCTTGGAGGTGCAGAAAAGGCAACACCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTATCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAGCTAGAAACCTGCTCTGACTCCAAACAAGAAGATTACACAGAAACCAAGAGCAGTGATGGTCATAGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAACTACTGAAAACTTGCAGATAGCTCAGGCTCTCCAAATGCAAATGGAAGTGCAGAGGAAACATTATGAACAAATTGAGGAGGTGCAGAAACATTTGCAGCTTAGAATTGAAGCTCAAGGGAAATATTTACAGTCAGTGCTAAAGAAAGCACAGGAAGCACTTGCTGGAAACAATTCTTCACCAGTGGGAATAGAACTCACAAAAGCTGAACTTTCTCAGCTAGTTACCATGATCAACAATGCTTGTCCAAGTTCTCCAATCTCAGAACTGACAGAAACAAGAGGATTGAGTTTAAACTGTGGAGAAAGGAAAAGAGACAGAGGAACTATGTGTTCATTGGAAAGTTCTTTAACATCTTCTGAAAGCTCAGGGAGAAAGGAAGAGAAACAACCAATGGAAGAAATAGGGGACTTAAAAAATTCCAATACTATTTCACTTGAATTGCCACTAATGACCATGCACCCAGAAGATAAAGCATCCAATGAAGATTCAAGTAATGAAGCTAGTGGGAGAAAGAGAAGTGCAGCAACTAAATCTGATGGTAGCTGTGTTGAGCAACCATGTGGCAACAAGTTGAGGAAACCCAAATTTTCAGAAATGCTTGACTTGAACAACAAATATCAGGGCGACATGGACTCAACAAGTGCAAAAACATTAGACTTAAATTGCAGTTTAAACTTTTGA 990 0.4071 MHFVLSTDAKPRLKWTPELHQRFVEATNQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETCSDSKQEDYTETKSSDGHSSREISLGAQNQTTENLQIAQALQMQMEVQRKHYEQIEEVQKHLQLRIEAQGKYLQSVLKKAQEALAGNNSSPVGIELTKAELSQLVTMINNACPSSPISELTETRGLSLNCGERKRDRGTMCSLESSLTSSESSGRKEEKQPMEEIGDLKNSNTISLELPLMTMHPEDKASNEDSSNEASGRKRSAATKSDGSCVEQPCGNKLRKPKFSEMLDLNNKYQGDMDSTSAKTLDLNCSLNF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01097 329 Pfam Myb-like DNA-binding domain 12 63 IPR001005 -
Rops1g01097 329 MobiDBLite consensus disorder prediction 258 297 - -
Rops1g01097 329 MobiDBLite consensus disorder prediction 70 101 - -
Rops1g01097 329 Pfam MYB-CC type transfactor, LHEQLE motif 107 154 IPR025756 -
Rops1g01097 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 269 IPR044848 GO:0003700
Rops1g01097 329 NCBIfam myb-like DNA-binding domain, SHAQKYF class 10 65 IPR006447 GO:0003677
Rops1g01097 329 FunFam Myb family transcription factor 9 67 - -
Rops1g01097 329 MobiDBLite consensus disorder prediction 272 286 - -
Rops1g01097 329 SUPERFAMILY Homeodomain-like 9 65 IPR009057 -
Rops1g01097 329 Coils Coil 110 130 - -
Rops1g01097 329 Gene3D - 9 67 - -
Rops1g01097 329 MobiDBLite consensus disorder prediction 203 244 - -
Rops1g01097 329 MobiDBLite consensus disorder prediction 223 237 - -
Rops1g01097 329 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01097 Rops-Chr1 25551449 25553373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01097 1 324 G2-like Transcription Factor Family AT1G69580 48.521 4.80e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g01097 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01097 - - gmx:100784670 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01097 1 25551449 25553373 Rops1g01097 1 25551449 25553373 ECH