Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01095 ATGGCTTCTGAACCTGAGGTATCTGAGATTTCATCTGTGTTTGAAAGGTTGGTGAGAAACAGAGACATGTCTCTGTTCTTACCCTTTCTCTTTGGCTTCTCAGAAGCTTCTTCTAGGAGAGATAGGGAAGACCCAGATCAAGAAAATGAGAATACTGAAGGTTCCCAACGTGAAAGAATCATCTTGGTGAACCCTTTTACACAGGGTATGGTTGTAATTGATGGTGCTTCAAGCCTTGAAGCTCTGTTCAGAGAACTTGGCAGTAACATCAAAGGTGGTCAACCACCAGCTTCGAAGGAATCCATTGATGCTATGCCAAGTGTTGAAGTTGGAGAAGGTGAAGATGGAGAGTGTGTAGTGTGTTTGGAGGATTTTGAGGTTGGTGGGGTGGTAAAAGAGATGCCTTGTAAGCATAGATTTCATCCTAATTGCATAGAGAAGTGGCTTGGGATTCATGGGTCTTGCCCTGTTTGTAGGTATGAGATGCCTGTTGATGAGAAAGATGTGGGGAAGAAGAGGGATGAAGAAGGGGGAGAGAGAAGGAGGGTTGGTGGTGGAGAAGTTTGGGTTAGTTTTTCTTTTAATGGGAGTAGGAGAAATCAGGATCCAAATCAAGCTACTTCTGGTGATTCCAATTCAAGTGATGATTCTTCATCAAGTCCGAGAGGTGATGATGCTGAGGGAGAGAATTAA 693 0.4372 MASEPEVSEISSVFERLVRNRDMSLFLPFLFGFSEASSRRDREDPDQENENTEGSQRERIILVNPFTQGMVVIDGASSLEALFRELGSNIKGGQPPASKESIDAMPSVEVGEGEDGECVVCLEDFEVGGVVKEMPCKHRFHPNCIEKWLGIHGSCPVCRYEMPVDEKDVGKKRDEEGGERRRVGGGEVWVSFSFNGSRRNQDPNQATSGDSNSSDDSSSSPRGDDAEGEN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01095 230 SUPERFAMILY RING/U-box 107 165 - -
Rops1g01095 230 MobiDBLite consensus disorder prediction 192 230 - -
Rops1g01095 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 165 IPR013083 -
Rops1g01095 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 163 - -
Rops1g01095 230 MobiDBLite consensus disorder prediction 193 219 - -
Rops1g01095 230 Pfam Ring finger domain 117 159 IPR001841 -
Rops1g01095 230 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Rops1g01095 230 MobiDBLite consensus disorder prediction 36 57 - -
Rops1g01095 230 MobiDBLite consensus disorder prediction 167 186 - -
Rops1g01095 230 SMART ring_2 118 158 IPR001841 -
Rops1g01095 230 MobiDBLite consensus disorder prediction 36 55 - -
Rops1g01095 230 MobiDBLite consensus disorder prediction 167 183 - -
Rops1g01095 230 FunFam E3 ubiquitin-protein ligase RNF181 87 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01095 Rops-Chr1 25517831 25518805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01095 1 212 C3H Transcription Factor Family AT1G26800 53.953 5.31e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01095 - - pcin:129321278 285.419