Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01086 ATGGATCCGATGATGAAGAGGACAACGACGAAGCTCCAAATCCGTTCTACAAATCTCTTCTCTCGCAACAACAACAACAACAATTCAAGATCGTTCTGTTCCAGCAGCACATTCTTCGCTTTTCTTATCTTCTCCTTCATTCTCATCCTCTCTTACTATGCTTTCTTCTCTTCATCGGGGAACAGCACCGTCCGGTACCGGATCATCGTCGACGGTGGAAGCACCGGGACTAGGGTTCATGTCTTCAAGTATGGGAGCGTGGATAAGGTGTTTGATTTTGGGAAGGAAGGGTTGGCTTCGATGAGGGTGAATCCGGGTTTGTCTTCATATTCGGAGGATCCGGATGGGGTGGGTCGGCCACTTTCGGAGCTTTTGGAGTTTGCGAAGGTTCGGATCCCGAAGGAGAGTTGGAGGGAAACGGAGATTCGGCTCATGGCAACGGCTGGGTTGAGGATGCTGGATTTGGAGGTGCAGGGGAAGATTCTAGAGTCTTGTAGAAGGGTCCTTCGTTCTTCTGGATTCAAGTTTAGGGATGATTGGGCTTCTGTTATCACAGGTTCTGATGAAGGAGTTTATGCTTGGGTTGTTGCTAATTATGCACTGGGAACTCTTGGAGGTGATCCTTTGGATACAACTGGGATTATTGAACTTGGTGGTGCTTCTGCTCAGGTGACTTTTGTATCAAGAGAAGTGATCCTGCCTTTGTTCTCACGTACTGTTAAATTCGGGAATATCACTTACAACCTTTACAGCCACAGCTTTCTTCATTTTGGCCTGGATGCTGCTCATGACTCATGGAGAGAAGCACTTATATCAGGAGATTTTAACATGGCTTCTCAATATACTCAGGAGGGGTTGCGCATAGATCCTTGCACTCCTACAGGGTACTCTTATAATGTTGATTCAAGGAAGTTTTCTCCTAGCTCACCCAGTGAAAAAAGCCAATATCATTCCACTGTCCAAACGAGAGGAAACTTTTCTGAGTGCAGATCTGCAGCATTGATGCTACTACAAAAAGGGAAAGAATCATGTTCCTATGCGCATTGTGACATAGGATCAACTTTCATACCTAAGCTTCAGGGAAAATTTTTGGCCACAGAAAATTTCTTTCACACATCAAAGTTTTTTAGATTGGGGCCAAGGGCCTACCTGTCCAAGTTGATGACTGCTGGGCAAGAATTATGTGGAGAGGATTGGTTAAGGCTGAAGAAGAAATATGTCTCCCATGATGAGGAAGATTTACTTCGATATTGCTTCTCTTCAGCATACATTGTTGCTTTGCTTCATGACAGTCTTGGATTTGCTCTGGATGATGAGAGGGTCAAGGTCGCTAATCAGGTGGGAAGTATTCCACTTGATTGGGCTTTGGGAGCTTTTATTCTACAAACCACAGCTGATGCAGATATACAAAACCCTGGGTGGATTGCTGCATTTTTCAGTGGAGGAAACCTCAGTTGA 1458 0.4506 MDPMMKRTTTKLQIRSTNLFSRNNNNNNSRSFCSSSTFFAFLIFSFILILSYYAFFSSSGNSTVRYRIIVDGGSTGTRVHVFKYGSVDKVFDFGKEGLASMRVNPGLSSYSEDPDGVGRPLSELLEFAKVRIPKESWRETEIRLMATAGLRMLDLEVQGKILESCRRVLRSSGFKFRDDWASVITGSDEGVYAWVVANYALGTLGGDPLDTTGIIELGGASAQVTFVSREVILPLFSRTVKFGNITYNLYSHSFLHFGLDAAHDSWREALISGDFNMASQYTQEGLRIDPCTPTGYSYNVDSRKFSPSSPSEKSQYHSTVQTRGNFSECRSAALMLLQKGKESCSYAHCDIGSTFIPKLQGKFLATENFFHTSKFFRLGPRAYLSKLMTAGQELCGEDWLRLKKKYVSHDEEDLLRYCFSSAYIVALLHDSLGFALDDERVKVANQVGSIPLDWALGAFILQTTADADIQNPGWIAAFFSGGNLS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01086 485 Pfam GDA1/CD39 (nucleoside phosphatase) family 62 464 IPR000407 GO:0016787
Rops1g01086 485 Gene3D Exopolyphosphatase. Domain 2 185 448 - -
Rops1g01086 485 Gene3D - 65 460 - -
Rops1g01086 485 CDD NBD_sugar-kinase_HSP70_actin 68 227 - -
Rops1g01086 485 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 37 468 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01086 Rops-Chr1 25411322 25417516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01086 38 463 Nodulin-like Gene Family AT4G19180 27.912 4.46e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01086 K01510 - gmx:100807287 697.582