Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01085 ATGTTGAATGTTGAAGTGATTGGCAACAAGAAAAGGAAGAGATGTGGGAGAGTTTTCAGGTTCAAGAACTTTGGTGAACCAGGGTACCCAGTTATGTTTACTGGGCCATCATTTCGTGAGAATGTGAATGCACTACTTGAATATGCAAACTTGGAGAGTAATTTAAGCATGGGAATGTCAATATGGTCGTTTCAACTTGAAGTTCATCACCACCCTCCTTTGCATATCTTGTTGCTTGTGATTGAAGAACCAATAGAGGCAGCACTGAATCGTCACTGCAAGCATTGTCAATATGTTGGTTGGGGCAACCATTTCATTTGCAATAAGAAGTATCATTTCCTGTTACCCTCAAAGGAGGCACTGGCCACCTGCACCAGCTGTGATGCAATTGCTACAATGAATAATGGTAAGTCGAACATAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTAAATGGGTTGGAAACGGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCCACGGATTGCAAGCAAGGAAAGTGAGCTTGAATGACATTTCACAGAAAAGAGGCATGGAACTGAGACTTGTGAATGCAATAGCATATAGTGAGCCATGGTTTGGTCATTGGGGTTACAAATTTGGTAGAGGAAGCTTTGGTGTAACTCAATCCATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACTTACTCATACACCACATTGACAATTCAAACCATGACATCCCACTAATCTTCTCAAGGTATCAAACACTTTCAGATCAATCTCTAGTTACCCTTGGTGACCTATTTCATTACATGTTAGAACTAAAGTCACGCCTTCCACGTGAAACATGCATTAGTTCCTATAACACCAATGCCTTAGTTGAGACCAATTGTCGTTGGTCACCTAAAAGGATTGAAATGGCCACAAGGGTCATTGTTGAAGCATTGAAAAGAACTGAGTTAAGATGGATTTCAAGGCAACAAGTTAGGGATGCTGCACGTGCTTACATTGGTGACACTGGTTTATTGGATTTTGTGTTAAAGTCACTAGGGAACCACATTGTAGGAAACTACTTGGTTAGGAGAAGTTTGAATCCTGTGACCAAAGTCTTGGAATATTGCTTAGAAGATATTTCCAATGTGTACCCTTGTCATGAAGGTTTGGTCATGAGTAATAATGAAGTTAAGGACAAGTACAAGATCACAAGGGCTCAACTCAAGAAGGACTTGCTTTATTTGTACAAGTATATTCTTATTGACCCTAAACCAATGGTAGGGTCAGAATTTCTCTCAGCTATAACATGGGCAGCTAGGATTATTCTTGACACCAAGTATTTTATCAAAGATTACTTTGGAGAGGTTCCTTTTCAGGTTGAGTTAGGCTCAGAAGGGAAAGTCAACCTTTATTGTACAATTTTGTTGAGGAACAATGCATGCCCTGATGAGTATTTGAACAATGCAATGCCACCTTATGAATGTATCACATTGAAAAACAGTGCTACTATCAATGACTTGAAGCTAGAAGTTGAAAGGAATTTCAGGGAAATCTATTGGGGATTGAGGAGTTTTGTGGTGGAATCAAGTGGGAATTTGAATGCCAATGGGAATGAAATGGTTTTTGGGGTGATTGAAGTGGGTGGAAAGGTTATACTTGAGGGTTGGCATGGTGGTGACATAGGAATAAACTTGATTGAGCAAATATGTGAAAGTGATCCAAACAATGGCATTGTCGATTGCACTTGTGGAACTAAAGAAGATGATGGTGAGAGAATGGTATCTTGTGATATTTGTGAAATTTGGCAGCACACTAGGTGTGTTCGGATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGCAAAAGAAGAAGAAAACGCGTAACGCAAAACAATGTACACTGTTTTTCAATCTCACTTCTCTTTTTCTTTCTTTCTTTCTCTTTGCTCTTTCCCATTTTCATTTTCTCGGGTTTTTTATTTGAGTTGATTTTTCCAATGAGCGATCATTTGGTGCTGTTCGTTGACCGTCTAGTGCGTCCTGTTCCCGTTGACCCCGTCGCGCAGCCGGCGCAGCTCCCTTCCGAACCATCGCCGGCTCCGGTCGCCGCGGATGTGGCAACCGCCGGGACCTCAGGCTCCGCACCGGAGGCGGATCGCGATGGCGAGGGTTGTGACGAGGAGGAGCCGCTGATTCAGATGGTGGAGTGCCGCATCTGCCAGGAGGAAGATGAAGTTTCGAATTTGGAGACGCCATGTGCATGCAGTGGAAGTCTTAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCACCACCTCGCCCTAATCCTGAAGAAACTACCATTGATATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTACGAGATCCTCGACTCTTGGCTATTGCAGAGGCAGAACGTCAATTATTGGATGCTGATTATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCACTTGCTCTAATTTTTATGGCCCTTTTACTCTTGCACCATGCACTCTCTGTCTCCGAAGGTGATGCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTACATTATGGCTTGGGCAATCAGTATTCTGCAACAACGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGGACAGCGTACAGGTCTGCAATTTGCGATGGCACCAGGACCCACAGTCCAGCAGGAACAAGTGTAG 2913 0.4301 MLNVEVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPSFRENVNALLEYANLESNLSMGMSIWSFQLEVHHHPPLHILLLVIEEPIEAALNRHCKHCQYVGWGNHFICNKKYHFLLPSKEALATCTSCDAIATMNNGKSNIIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMEFWNRLCHGLQARKVSLNDISQKRGMELRLVNAIAYSEPWFGHWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIDNSNHDIPLIFSRYQTLSDQSLVTLGDLFHYMLELKSRLPRETCISSYNTNALVETNCRWSPKRIEMATRVIVEALKRTELRWISRQQVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVMSNNEVKDKYKITRAQLKKDLLYLYKYILIDPKPMVGSEFLSAITWAARIILDTKYFIKDYFGEVPFQVELGSEGKVNLYCTILLRNNACPDEYLNNAMPPYECITLKNSATINDLKLEVERNFREIYWGLRSFVVESSGNLNANGNEMVFGVIEVGGKVILEGWHGGDIGINLIEQICESDPNNGIVDCTCGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRRRKRVTQNNVHCFSISLLFFFLSFSLLFPIFIFSGFLFELIFPMSDHLVLFVDRLVRPVPVDPVAQPAQLPSEPSPAPVAADVATAGTSGSAPEADRDGEGCDEEEPLIQMVECRICQEEDEVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQLLDADYDEYAASNASGAAFCRSLALIFMALLLLHHALSVSEGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQQRRQRQEAAALAATQVAFVLQSGQRTGLQFAMAPGPTVQQEQV* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01085 970 Pfam PHD-finger 596 638 IPR019787 -
Rops1g01085 970 Pfam RING-variant domain 753 798 IPR011016 GO:0008270
Rops1g01085 970 SMART PHD_3 595 641 IPR001965 -
Rops1g01085 970 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 647 IPR013083 -
Rops1g01085 970 ProSiteProfiles Zinc finger RING-CH-type profile. 745 805 IPR011016 GO:0008270
Rops1g01085 970 FunFam RING/FYVE/PHD zinc finger protein 741 809 - -
Rops1g01085 970 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 643 - -
Rops1g01085 970 Pfam Protein of unknown function (DUF3675) 804 923 IPR022143 -
Rops1g01085 970 SMART ringv_2 752 799 IPR011016 GO:0008270
Rops1g01085 970 SUPERFAMILY FYVE/PHD zinc finger 587 638 IPR011011 -
Rops1g01085 970 CDD PHD_MMD1_like 595 639 - -
Rops1g01085 970 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 807 IPR013083 -
Rops1g01085 970 MobiDBLite consensus disorder prediction 706 741 - -
Rops1g01085 970 CDD RING_CH-C4HC3_MARCH 753 799 - -
Rops1g01085 970 SUPERFAMILY RING/U-box 751 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01085 Rops-Chr1 25389853 25402141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01085 10 638 PHD Transcription Factor Family AT5G22260 50.755 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops1g01085 DUF3675 9.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01085 K26271 - gmx:100780210 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01085 1 25389853 25402141 Rops1g01085 1 25389853 25402141 ECH