Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01082 ATGGATAGAAACACAAACCCCACATCTTCCTCTTCCTCTACCTACGAGTGTACTTATGATGTTTTCCTCAGTTTTGGAGGTAAAGATACCCGTAGAGGTTTCACTGGAAGCCTTTACAATGCTCTGCGTGACAAGGGAATCAACACTTTCATGGATGACCAAGAGATTAGGAAAGGAGAAGAAATCACACCAGCTCTCATGAAGGCAATCCAACACTCTAGGATTGCAATTGTGATATTCTCAGAGAACTATGCATTCTCTAGGTTTTGTTTGGATGAGCTTGTGAAGATCATGGAGTGTTTCAAAGCCAAGGGCAGGTTGGTTTGGCCAGTTTTTTATCAAGTAGAACCTTCTGATGTGCGCCATCAGAGAGGGAGTTATGCAGAAGCACTGAACATGCATGAAACAAAAAAGGTTGACAAGGAGAAGGTGAAAAGGTGGAGGTCTGCTTTGTGGAAAGCAGCTAATCTCTCTGGTTGGCATTTCAAACATGGATCTGATAAAATTGAGATCATCATGCTACATATGCTCAAAGATAAAGAAGTGCAATGGGATGGAAATGCATTCAAAAAGATGGAAAATCTTAAAATACTTGTAGTAAAAAATGCTCGCTTTTCCAGAGGACCTAGTCATCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTGGATATCCTGAACCATCGCTGCCATCTAGTTATGATCCAAAGAAACTTGTCATACTGGACTTGTCTCTGAGTTTCTTTACATTTGAAGATCAAGTGGTCACGAAATTTAAGTCTTTGAAGGTGATGAAGTTAAACGGATGCCAATTGTTAAAACAAGTACCTGATCTCTCTGGAGCACCAAATTTGAAGGAACTGAATCTTGATGACTGCAAGAATTTACTTCAGGTTCATGATTCCATTGGATTCCTTGATAAACTTGAATATCTGAGGCTTAGTCGCTGCACCAATCTTCGGGTTCTTCCTCGTGGCATCAACTTAAAGTCTCTAAAATGTCTGTCACTAAAGAAGTGTTCAAGTCTCAAGAGTTTTCCAGAAATTTTAGGGGAGATGGAGAATATAAGATACATTAGTTTGAGTGATAGTGGCATAAGAGAATTACCTCTTTCAATTGGAAAGCTTACTGGGCTTCAACACCTGTTTCTGTATAGATGCAAGGGGCTACTTCAACTACCAAGTAGTATTTTAATGTTGCCAAAACTTGATGTCTTGAGAGCTGACTATTGTGAAGGGTATGGTATTAAATTGCAGCTGAGGCATTGTTCTAAGTTATGGTTACGTTGCTATCACAGATATATTCAGAAAAGAATATTGCAGGTGAAGACATCCAGAGTGGCAACTGCATCACGAAAACCCTTCAAACGGCAATATTATTATGGCACTGGCTCCCATTGCAAATGCAGATCACAATTTAAAATTGAGGGTTGTGCGCAACTGTGA 1443 0.3971 MDRNTNPTSSSSSTYECTYDVFLSFGGKDTRRGFTGSLYNALRDKGINTFMDDQEIRKGEEITPALMKAIQHSRIAIVIFSENYAFSRFCLDELVKIMECFKAKGRLVWPVFYQVEPSDVRHQRGSYAEALNMHETKKVDKEKVKRWRSALWKAANLSGWHFKHGSDKIEIIMLHMLKDKEVQWDGNAFKKMENLKILVVKNARFSRGPSHLPKSLRVLKWCGYPEPSLPSSYDPKKLVILDLSLSFFTFEDQVVTKFKSLKVMKLNGCQLLKQVPDLSGAPNLKELNLDDCKNLLQVHDSIGFLDKLEYLRLSRCTNLRVLPRGINLKSLKCLSLKKCSSLKSFPEILGEMENIRYISLSDSGIRELPLSIGKLTGLQHLFLYRCKGLLQLPSSILMLPKLDVLRADYCEGYGIKLQLRHCSKLWLRCYHRYIQKRILQVKTSRVATASRKPFKRQYYYGTGSHCKCRSQFKIEGCAQL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01082 480 Pfam TIR domain 19 184 IPR000157 GO:0007165
Rops1g01082 480 Gene3D - 16 178 IPR035897 -
Rops1g01082 480 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 175 IPR044974 GO:0006952
Rops1g01082 480 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Rops1g01082 480 Gene3D Ribonuclease Inhibitor 327 432 IPR032675 -
Rops1g01082 480 Gene3D Ribonuclease Inhibitor 179 326 IPR032675 -
Rops1g01082 480 ProSiteProfiles TIR domain profile. 17 180 IPR000157 GO:0007165
Rops1g01082 480 SMART till_3 18 157 IPR000157 GO:0007165
Rops1g01082 480 SUPERFAMILY L domain-like 159 428 - -
Rops1g01082 480 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01082 Rops-Chr1 25320284 25323545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01082 148 410 WRKY Transcription Factor Family AT4G12020 34.507 5.94e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01082 - - gmx:100814790 328.176