Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01079 ATGGAAGAGAGAAATGATGCTGAGAAACTAGATGAAGTTTTGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTAAAGAGAAAGATTCAGCAGAGGCCTTTGTCTATTGAGCTCATCAAACAGCTTGATATTTATAAATATGATCCTTGGGACCTTCCAAAGTTGGCTACTACGGGAGAGAAAGAGTGGTATTTCTACTGTCCCAGAGACAGGAAATACAGAAACAGTGCCAGGCCTAACAGGGTAACTGGAGCTGGGTTTTGGAAAGCTACAGGGACTGATAGGCCTATTTACTCCTCAGAAGGTTCCAAGTGTATTGGCCTGAAGAAATCCCTTGTCTTTTACAAAGGTAGAGCTGCTAGAGGAGTAAAAACTGACTGGATGATGCATGAGTTCAGGTTACCTTCTCTCACAGACTCATTGTCCCCAAAGAAGTACTTGGACAAGACCATTCCTGCTAATGAATCTTGGGCAATATGCAGGATATTCAAGAAAACCAATTCTACAGCACAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCTTACCTGAAACAAGAACCTTTGATATGCTAACCAAAGATCAAGACAGCACCCAGTTTTGTTCAGACAACATGTCATTGACAAAGAAAACTAGCTTACCAAGCCAGTTCTGTACTACTAACAACAATGATACCCAACAACACTTGAACACTAATAGTACCAATCTTTGTCCTTTAGATGTTGCCACTTATAAATCAATTATCAACCCATTATTGCTACACAAAGCCTTTGATCATTTACCACCCATTTCAAATGGAGATCTTAATACTAGCTTCATATTCTCATCTCCACTTGAAACATCAAATACTAATACCAAATCCACTATGGATGTTTCTTCCATGTTGTTGAACATGTCATCATCCATGCTTGGAGATTTTAGCAAGACTTCTGAGGATTCAACCACAAACTTCAATGGTGGGTTGCAACAAGAGCAATGCAATGACTACACAATACCACCATTTCTACGTGAGATGCAAGCCACATTTGGGAACCAATATGATAATAATAATAACAATAATGCAGCATTGGTAAAGGTTCCTAATGTGAATATGCCTCGTGTTGATGACCAAGAGTTGGAAACAGTACGATCCGTTGGGTTCCCATTTATGCATTTCAATATTGGTGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCTTCTTGTCCTTGTGATGTTCCCTCTAGTTATTCCACAACCAAGTGTTATACTTAG 1275 0.3992 MEERNDAEKLDEVLLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAARGVKTDWMMHEFRLPSLTDSLSPKKYLDKTIPANESWAICRIFKKTNSTAQRALSHSWVSSLPETRTFDMLTKDQDSTQFCSDNMSLTKKTSLPSQFCTTNNNDTQQHLNTNSTNLCPLDVATYKSIINPLLLHKAFDHLPPISNGDLNTSFIFSSPLETSNTNTKSTMDVSSMLLNMSSSMLGDFSKTSEDSTTNFNGGLQQEQCNDYTIPPFLREMQATFGNQYDNNNNNNAALVKVPNVNMPRVDDQELETVRSVGFPFMHFNIGDAWKSNLLWDTSSCPCDVPSSYSTTKCYT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01079 424 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Rops1g01079 424 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Rops1g01079 424 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Rops1g01079 424 FunFam NAC domain-containing protein 35 23 175 - -
Rops1g01079 424 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Rops1g01079 424 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01079 Rops-Chr1 25243110 25244885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01079 1 348 NAC Transcription Factor Family AT1G26870 52.381 2.24e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops1g01079 NAM 9.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01079 - - gmx:100783995 644.425