Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01064 ATGAATTTGGATCTAGAATCTTTGGCAGAGGCAACTTCTGGAGCAATTGGATCATTGCTCAGTACAACTATCTTGTACCCACTTGATACTTGTAAGACTAAGTACCAGGCTGAGGCACTTTCCCATGGTCACCAAAAGTACAAGAATCTCACTGATGTGTTATGGGAGGCAATATCTACCCGCCAGGTGCTTTCCCTTTACCAGGGCCTTGGAACAAAAAATCTACAATCCTTCACTTCGCAGTTTGTCTACTTCTATGGCTACAGCTACTTTAAAAGACTGTATCTGGAAAAAAGTGGTTATAAATCCATTGGAACAAAAGCAAACTTGGTAATTGCTGCTGCTGCTGGGGCATGCACAGCCATTGTGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAAACAAGTGCCTTTGGAAAGTCAAAAGGGCTATTGAAAACCCTCACAGAAGGCACCTGGAGTGACGCATTTGATGGCCTCAGCATTTCCTTGCTGCTGACCTCGAACCCTGCAATTCAGTATACGGTGTTTGATCAGCTGAAACAACGAGCACTGAAGAATAAACAAAACAAAGCTGAGAAAGGAGTATCTCCAGCATCCCTTTCTGCATTTATGGCCTTTCTTTTAGGTGCAATATCGAAGAGTGTTGCTACCTGTCTAACATATCCTGCTATCAGGTGCAAAGTCATCATTCAAGCTGCAGACTCAGATGAAGCATCCTCCAAAAAACCCATAAAATCACCGAAAACTGTGTCTGGAGTTTTCTATGGAATATGGAAAAGGGAGGGCATACCGGGCTTTTTTAAAGGATTACATGCTCAGATCTTAAAAACTGTTTTGAGCTCAGCACTGCTCTTAATGATCAAGGAAAAGATCTCCGCTACTACTTGGGTGCTTATACTTGCAGTTAGAAGGTATCTATTACTCCCAAGGGGCAGGGTTAAAAACTTGTAA 957 0.4305 MNLDLESLAEATSGAIGSLLSTTILYPLDTCKTKYQAEALSHGHQKYKNLTDVLWEAISTRQVLSLYQGLGTKNLQSFTSQFVYFYGYSYFKRLYLEKSGYKSIGTKANLVIAAAAGACTAIVTQPLDTASSRMQTSAFGKSKGLLKTLTEGTWSDAFDGLSISLLLTSNPAIQYTVFDQLKQRALKNKQNKAEKGVSPASLSAFMAFLLGAISKSVATCLTYPAIRCKVIIQAADSDEASSKKPIKSPKTVSGVFYGIWKREGIPGFFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAVRRYLLLPRGRVKNL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01064 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Rops1g01064 318 Gene3D Mitochondrial carrier domain 2 297 IPR023395 -
Rops1g01064 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Rops1g01064 318 FunFam Peroxisomal adenine nucleotide carrier 1 3 297 - -
Rops1g01064 318 Pfam Mitochondrial carrier protein 202 294 IPR018108 -
Rops1g01064 318 Pfam Mitochondrial carrier protein 6 98 IPR018108 -
Rops1g01064 318 Pfam Mitochondrial carrier protein 104 188 IPR018108 -
Rops1g01064 318 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 317 IPR045900 GO:0005347|GO:0006635|GO:0015217
Rops1g01064 318 SUPERFAMILY Mitochondrial carrier 7 292 IPR023395 -
Rops1g01064 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 296 IPR018108 -
Rops1g01064 318 PRINTS Mitochondrial carrier protein signature 20 38 IPR002067 GO:0055085
Rops1g01064 318 PRINTS Mitochondrial carrier protein signature 67 85 IPR002067 GO:0055085
Rops1g01064 318 PRINTS Mitochondrial carrier protein signature 113 135 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01064 Rops-Chr1 25086498 25089776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01064 23 311 Chloroplast and Mitochondria Gene Families AT1G25380 25.581 1.36e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01064 - - gmx:100787682 552.747