Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01061 ATGCAGTTGTTGTTTGCAACCTCGGACCTTACTCCTACAAAACCCACGTCACCATGTCAAGGACTTTGTTTGGTGGAAGTGTTAGAAGAGCAACATTTTCCCAAACACGATGATGCTGGATCCTGGATACAAGATTATGCTTTAATGCTATCCATGAGAAAAGAGGTTCCTTGGTATCTGGATGATGGGGCTGATCGTGTGCATGTGGTTGGAGCTCGGGATGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCAGGTCGATCACTTGTACGTGGAACATTAGATTATCTCCAAGGTTCTAAGATGCATGGAGTTAAGAAGATTGACTGGGTACTTCCAGTTGGAACCTCCTTGACTGTTGTTGGTGATGCAACGATATGGACGGAGCAAGAGCATGGTGAAGCGATCAAAGAGAAGCTTCGCCAACACAAGCTCTATCAACCTGCTCTCAAGCTATCAGAAACCATGGCTAAGAGGAACATGAACAAGACCGTCAGTGACCGTGCTATACATCTTGATTTGCTTGCAAAAGCTCGCGGGGCATGTGTAAAATTAGATATGCTGGAGAAGGCTGAAGAGATCCAGGAGCACGCTCGCAGGAGGAGGGGTGGCATCAGGTTCACCATCAATGGTCATTCCTACTTCAACTTGGTCCTCATTACTAATGTTGGGGTGCTGGTGATACCCATTGTGGGCACGTTCTACATGTGCCATGCAAGAACAAGGAGTTTGCCTTCAACACGATGA 750 0.468 MQLLFATSDLTPTKPTSPCQGLCLVEVLEEQHFPKHDDAGSWIQDYALMLSMRKEVPWYLDDGADRVHVVGARDATGFVLPVGSEAGRSLVRGTLDYLQGSKMHGVKKIDWVLPVGTSLTVVGDATIWTEQEHGEAIKEKLRQHKLYQPALKLSETMAKRNMNKTVSDRAIHLDLLAKARGACVKLDMLEKAEEIQEHARRRRGGIRFTINGHSYFNLVLITNVGVLVIPIVGTFYMCHARTRSLPSTR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01061 249 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Rops1g01061 249 PRINTS Expansin signature 204 216 IPR002963 GO:0009664
Rops1g01061 249 PANTHER - 23 126 IPR044231 GO:0004842|GO:0016567
Rops1g01061 249 Pfam E3 Ubiquitin ligase 35 125 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01061 Rops-Chr1 25040854 25042579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01061 11 149 C3H Transcription Factor Family AT1G63900 55.245 2.27e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01061 K15688 - gmx:100800734 162.925