Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01060 ATGGAATTGGAAGCTGATCATCAAAATGGGATCCGAAACAGACCCAATTTCCCTCTTCAACTGTTAGAGAAAAAAGACGTTGATGATGTCTCAGAACAAAGACAACAACCTTGTACCACCACCGCAAACGACGGCGCCACCATCATCACCACTACTGACAACAACAACCTTAATTCGGAGCAGCAGAAGAAGCCGCCACCGAAAAGGAACTCCACCAAAGACCGGCACACAAAGGTTGATGGACGTGGCCGCCGGATCCGCATGCCGGCGGCGTGCGCCGCCAGGGTGTTTCAATTGACACGTGAGCTTGGACACAAATCCGACGGTGAAACCATTGAGTGGCTCCTCCAACAAGCGGAACCATCCGTCATTGCCGCCACCGGAACCGGCACCATTCCGGCGAACTTCACTTCCTTAAACATCTCTCTAAGGAGCTCAGGTTCCACCATGTCGGCGCCATCACACTATTTCCGAGGAAACTACTTCAACCCTAGCACGTTTTCCACGGCAGCACAGTTAAGGAACCGTGTAGAGTGGGATAGGAACATAAACATAAACAATAACAACATGAACATGAACATGGTACTGGAAGATTCTCGAAGGATGTTGGAGAACCCTTCTTCTTCTTCTTCTATCTCAGCTATTTTGAATTTCAACCCTGTTGGCAACGTGAATGCAGCCATTTTACAAGCAAAACAGGAGCTCCGGGAAGAGGCTGCCACCGCCGCCGGTGGCAGAGGACTTGAATTGGCGGCAGCGGATTCTGATGGAAGCTTGGGGAGAAAACGGAGGCATGAACAAGAATTGTCACAAATGGGAAGTTACTTGTTACAATCGAATGTGGGGTCACTTCCGGCGAGCCATGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGAAACTCGGGTGTGAGTGGTGGCGGTGGCAATGGTGGTAATCCCATTTGGGCAATTCCCTCTGCAGGGAATAGTGGGATGCACAGAGAATCCATGTCAGCACCTAATGGAATTCATTTCATGAATTTTGCTTCTCCAATGCCCTTTCTTCCCGGAGGTCAATTAGCTTCCGGTGGAATTGGAGGCGGCGGCGGCGGTGGTGGTGCTGCACTTCTAAGTGAAAGCAACTTGGGCATGCTTTCAGCACTTAATGCCTATAGGCAGATTCCGGCAAACGGTGTTTCGGAGTCTCCGGCGAGTGCCGGGCAACATCATGGAGGAGATGATGGACATGACTCAACCAGTCAACATTCCTAA 1260 0.5095 MELEADHQNGIRNRPNFPLQLLEKKDVDDVSEQRQQPCTTTANDGATIITTTDNNNLNSEQQKKPPPKRNSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTAAQLRNRVEWDRNININNNNMNMNMVLEDSRRMLENPSSSSSISAILNFNPVGNVNAAILQAKQELREEAATAAGGRGLELAAADSDGSLGRKRRHEQELSQMGSYLLQSNVGSLPASHASNTAAFWMVAGHGNSGVSGGGGNGGNPIWAIPSAGNSGMHRESMSAPNGIHFMNFASPMPFLPGGQLASGGIGGGGGGGGAALLSESNLGMLSALNAYRQIPANGVSESPASAGQHHGGDDGHDSTSQHS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01060 419 ProSiteProfiles TCP domain profile. 72 126 IPR017887 -
Rops1g01060 419 MobiDBLite consensus disorder prediction 393 419 - -
Rops1g01060 419 MobiDBLite consensus disorder prediction 1 20 - -
Rops1g01060 419 MobiDBLite consensus disorder prediction 33 65 - -
Rops1g01060 419 Pfam TCP family transcription factor 71 219 IPR017887 -
Rops1g01060 419 MobiDBLite consensus disorder prediction 66 83 - -
Rops1g01060 419 MobiDBLite consensus disorder prediction 27 83 - -
Rops1g01060 419 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 393 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01060 Rops-Chr1 25008020 25009720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01060 271 419 TCP Transcription Factor Family AT1G69690 36.025 1.25e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops1g01060 TCP 6.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01060 - - gmx:100809966 535.798