Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01055 ATGTGGAACCGAGGATTCAGTGTTTTGATCTGGGGTTTCATTTTGTTGGCCTCAATATCTGTAATTTCTTGTCTGGAACCCGAACTGGGATCGACCCGCGTCGTCTTTCAGACAGATTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGACCACATTTTTAAACTTGTGCAACTTGGAGGCTATAACACTAATCATTTCTTTCGGGTGGATAAAGGATTTGTAGCCCAAGTAGCTGATGTAATGGCTGGGAGATCTGCTCCCATGAATGAGGAGCAAAGAAGAGAAGCTAAAAAGACTGTTGTTGGTGAATTTAGTGAAGTCAAACATGTACGCGGTATTCTTTCTATGGGAAGGTATGATGATCCAGACAGTGCTTCGTCCTCGTTTTCAATACTACTTGGAAATGCTCCTCATCTTGATGGCAAGTATGCAATATTTGGAAGAGTAACTAAAGGTGATGAGACATTGACAAAGCTCGAGCAACTACCTACACGTAAAGAGGGTATATTTGTAATGCCGACAGAGCGCATCACTATCCTATCATCATATTACTATGACACAGAGACAGAAAATTGTGAGCAAGACAGATCAATTTTGAAGCGCAAGTTAGCTGCATCAGCTGTTGAAGTTGAAAAACAGAGGATGAGATGTTTCCCCTGA 681 0.4141 MWNRGFSVLIWGFILLASISVISCLEPELGSTRVVFQTDYGDIEFGFFPTVAPKTVDHIFKLVQLGGYNTNHFFRVDKGFVAQVADVMAGRSAPMNEEQRREAKKTVVGEFSEVKHVRGILSMGRYDDPDSASSSFSILLGNAPHLDGKYAIFGRVTKGDETLTKLEQLPTRKEGIFVMPTERITILSSYYYDTETENCEQDRSILKRKLAASAVEVEKQRMRCFP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01055 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Rops1g01055 226 Gene3D - 23 199 IPR029000 -
Rops1g01055 226 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Rops1g01055 226 CDD cyclophilin 35 188 - -
Rops1g01055 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Rops1g01055 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 13 226 IPR044233 -
Rops1g01055 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Rops1g01055 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Rops1g01055 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Rops1g01055 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Rops1g01055 226 SUPERFAMILY Cyclophilin-like 31 193 IPR029000 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01055 34 192 U-box Gene Family AT5G67530 28.144 2.91e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01055 - - gmx:100819238 406.757