Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01053 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAATCCCTCACCACGATGAACATCATCAACCTCCACCTTCACTCAACTCAATACTACCCACACGCACACCTCAAGATTATCATGGGGGACCATCTTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATTGAACTTGGAGAAGAAGCCAAGGCTGAGGAAGATTTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATACAGCTTGCAAGAGCTCTTGGACTGCAGCCTAGACAAATTGCTATATGGTTCCAGAATAGGAGGGCTAGATGGAAGACCAAGCAGTTGGAGAAAGATTATGATCTCCTTAAAAGACAGTATGAAGCTGTAAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAGCTTCAAGCTGAGATATTGACACTGAAAAGTAGAGAGCCAACTGAATCTATCAACCTTAATAAAGAAACAGAAGGATCCAGCAGCAATAGAAGTGAGAACAGTTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGATAGTCCCTTATCTACACATCACCCTAGCAGAACTCTCTTTCCATCATCTGCTAGGCCTACAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTCCAAAGCCAAAAGATTGATCAAATAGTCAAAGAAGAAAGCTTAAGCAACATGTTTTGTGGAATGGATGATCAATCTGGGTTTTGGCCATGGTTGGAGCAGCAACATTTTAATTGA 843 0.4235 MAFFPANFMLQIPHHDEHHQPPPSLNSILPTRTPQDYHGGPSFLGKRSMSFSSGIELGEEAKAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALQAQNQKLQAEILTLKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSTHHPSRTLFPSSARPTGVAQLFQTSSRPDLQSQKIDQIVKEESLSNMFCGMDDQSGFWPWLEQQHFN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01053 280 SMART HOX_1 75 136 IPR001356 GO:0003677
Rops1g01053 280 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Rops1g01053 280 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Rops1g01053 280 MobiDBLite consensus disorder prediction 175 200 - -
Rops1g01053 280 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Rops1g01053 280 MobiDBLite consensus disorder prediction 60 80 - -
Rops1g01053 280 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Rops1g01053 280 Gene3D - 69 138 - -
Rops1g01053 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 212 IPR045224 GO:0003700
Rops1g01053 280 SUPERFAMILY Homeodomain-like 71 134 IPR009057 -
Rops1g01053 280 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Rops1g01053 280 Coils Coil 124 172 - -
Rops1g01053 280 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Rops1g01053 280 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Rops1g01053 280 CDD homeodomain 77 133 IPR001356 GO:0003677
Rops1g01053 280 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01053 Rops-Chr1 24784483 24786451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01053 1 280 Homeobox Transcription Factor Family AT1G69780 63.390 3.38e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops1g01053 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01053 K09338 - gmx:100814080 504.212