Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01050 ATGCAAGATACTAAGAAGCAGCAGAAGCAGAAGCAGCTGACCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTGAGAGAGCAGATTGGCATCCATGGAACTGAAAATTGGGCTATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGAGGGTGGTCACCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAATACTTCATACATCAATTCAAATAACAAAAGGATTATTTTCCAACAGGGGTATAATACAGATGCAGCATCAGAATCTGCAGTAGCTATTAAGAAGATGAGGAGGTCCCATATCCCTGATGGTGCAGAAAGGATCAACTATGGAGACAGATCACATAAACAAAATGGCACTCCGTTAACTCAGCAGTCAAGAGCACCATTTGCAGTTTTAGCTCAAAACTCTCATAATATCAACAACTTGCCAAACCAGCATCATGTCTGCAATGTGAAGTTTAATGGTTATGCCCAAAACAAGAAGTTCCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAGCGCATTGATGCAACAAGCTGAGGTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTCTGAACCGAACTAAAGAATCAGATATTCCCAGTTACAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGGTTTATTGGAAGACTTGAGGAGTAGTAGTGAGGAAATCCAACCATGTTGGAGGCATATGGAACTATATGAAGATTCTCCAGGCAGTTCTGAACACAGTACAGGATCCACACTCCTGCCTCATTCTTCTGGTGAGAATTTGAAACACTCGCTGCATCAGGATATTGGAACTGAACTGAAGTCTATACAAATTGGAGATCAACAAGGAGTTAGAGGATGTGACCAAGTGGTTCTTTCTAGTGCAACTTTGGATCAAGCAGATGCATTCCCATCTTGTGAGGAACAGATAAACAATGATGGCATTGTTTCTGCCTTATCAAGTGCAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTCTGTTCAGATCCTTAGCTGCAGGAATTCCTAGCCCGCAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTCGGAATGGAGTCTCCATCTCTCAATCCTAATGCCAACCCCTCACAACCTCCACTCTGCAAAAGAGCCCTCCTACACAGTTTATAA 1434 0.4093 MQDTKKQQKQKQLTNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIIFQQGYNTDAASESAVAIKKMRRSHIPDGAERINYGDRSHKQNGTPLTQQSRAPFAVLAQNSHNINNLPNQHHVCNVKFNGYAQNKKFQGTFLKKDDPKISALMQQAEVLSSLALKVDAENMDQSLENAWKILQEFLNRTKESDIPSYKIPDLQLVDLKGLLEDLRSSSEEIQPCWRHMELYEDSPGSSEHSTGSTLLPHSSGENLKHSLHQDIGTELKSIQIGDQQGVRGCDQVVLSSATLDQADAFPSCEEQINNDGIVSALSSAEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPNANPSQPPLCKRALLHSL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01050 477 Gene3D - 79 148 - -
Rops1g01050 477 Gene3D - 12 76 - -
Rops1g01050 477 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Rops1g01050 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Rops1g01050 477 SMART sant 24 73 IPR001005 -
Rops1g01050 477 SMART sant 76 124 IPR001005 -
Rops1g01050 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Rops1g01050 477 CDD SANT 80 121 IPR001005 -
Rops1g01050 477 Pfam Myb-like DNA-binding domain 28 88 - -
Rops1g01050 477 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Rops1g01050 477 PANTHER MYB PROTEIN-RELATED 27 185 - -
Rops1g01050 477 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g01050 477 FunFam Transcription factor MYB124 20 76 - -
Rops1g01050 477 CDD SANT 27 71 IPR001005 -
Rops1g01050 477 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01050 Rops-Chr1 24745638 24752861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01050 1 324 MYB Transcription Factor Family AT2G02820 61.862 3.07e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01050 Myb_DNA-bind_6 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01050 K09422 - gmx:100807667 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01050 1 24745638 24752861 Rops1g01050 1 24745638 24752861 ECH