Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01045 ATGGGTAACTGTTTAGATTCTTCTGCTAAAGTTGATGCAGCTCAGAGCTCCAGATCCACTTCTGGAATCTCAAAAACTACTCCTTCCAGCTTATCCATTCCATCATACAGTGAAAAAAGCAATGCCTCAACTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTCAAGGCCTTCACATTCAATGAGCTGAGGAATGCCACCAGGAATTTTCGTCCCGATAGTCTTCTTGGTGAAGGGGGATTTGGTCATGTTTATAAGGGATGGATAGATGCACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAGGCTTAAACCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTGCACCATCCTAATCTGGTTAAATTAATTGGGTACTGCTTGGAAGGAGAGAACCGGCTATTGGTATATGAATTTATGCCCAAAGGGAGCTTAGAAAACCATCTATTTAGAAGAGGACCTCAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTCTCTTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCTAACATCCTTCTGGATGCAGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCTAAGGCAGGTCCTACTGGTGATAGGACTCATGTATCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTGACAGCCAAAAGTGATGTATACAGCTTTGGAGTAGTGTTGCTTGAACTTTTGTCGGGAAGACGTGCCGTTGATAAAACAATAGCCGGATTTGAACAGAATCTGGTGGAATGGGCAAAACCATATTTAGGTGACAAAAGAAGACTATTCAGGATCATGGATACAAAGTTGGAGGGCCAATACCCACAAAAAGGAGCCTTCATGGCAGCCACACTTGCTCTACAATGCCTAAACAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAAGTTTTAACAACTCTGGAACAGATAGAAGCCCCTAAAAATGCAGGTAGAAATTCTCAACAAGAACATCACAGAGTCCACACTCCTGTAAGAAGGTCTCCTGCAAGAAACCGGACCCCTTTGAATCTTACTCCTACTGCATCTCCATTGCCATGTCACCGGCAATCTCCTCGAGCAGTGCACTAA 1233 0.4388 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSYSEKSNASTLPTPRSEGEILSSPNLKAFTFNELRNATRNFRPDSLLGEGGFGHVYKGWIDAHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGFEQNLVEWAKPYLGDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLTTLEQIEAPKNAGRNSQQEHHRVHTPVRRSPARNRTPLNLTPTASPLPCHRQSPRAVH* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01045 410 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Rops1g01045 410 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Rops1g01045 410 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Rops1g01045 410 CDD STKc_IRAK 81 358 - -
Rops1g01045 410 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Rops1g01045 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Rops1g01045 410 MobiDBLite consensus disorder prediction 384 400 - -
Rops1g01045 410 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Rops1g01045 410 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Rops1g01045 410 PANTHER OS01G0588500 PROTEIN-RELATED 36 359 - -
Rops1g01045 410 MobiDBLite consensus disorder prediction 1 54 - -
Rops1g01045 410 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01045 410 MobiDBLite consensus disorder prediction 360 410 - -
Rops1g01045 410 MobiDBLite consensus disorder prediction 9 54 - -
Rops1g01045 410 SUPERFAMILY Protein kinase-like (PK-like) 47 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01045 Rops-Chr1 24685219 24688723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01045 51 355 Glycoside Hydrolase AT3G07070 53.896 4.09e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops1g01045 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01045 - - gmx:100809778 774.622