Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01038 ATGGGGAAAGGAAGAAGTCCAGGGAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCATCATCAAAGTCTAATTCATCAAAGAAGAATGATATTTTTAAACTTTCAAGTGACAAGGATGTGCTGGGGGCTTCCGAGGTATCTTTGTCTGATCCAACTGTGGATTCTTTGCTGATATCTGCACCAATATCTGGAGCTAATGCTACTAAAGGAGTGCTTTCGGAAAAGGAAGTAGTTAGTAGGTCATCACATGACAGAGATATTCTCACAAATGGAGAGGAAGAGGCTCATGCGCAAGCTACTGCTAATATTGCATCTCAAGAGGATCTCGAGAAACTCAGGCTTACAGAAGCAGCGATAAAAGTTCAGGCTGCTTGCAGAGGCTATCAGGCTCGTCGGTCATTTCAAACTCTCAAAGGTATCGTACCACTGCAAGCTCTTATTCGTGGCCGCTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGCATTGTTAAATTTCAAGCACTGGCTCGTGGTTACAATGTTAGGTGCTCTGATATTGGGCTTGAAGTCCTGAAAATTCGTAAGGATGCTCAATGTTCAAATTCTGTCGGGGTAGTTACATCCACACAGGCAGAGAAGCTGTCAGAAAGTGTCTTTGTTCAGAAGCTTTTGGCTTCATCATCCTTTGCATTTCCTCTATCTCTCAATGGTGATCTTGGAGAACCTAACTTGGCTTGGAAGTGGCTTGACCGCTGGACAAAGTCACACTTTTGGGCACCTCTTCCTGAATTGAAGAAGAAACTTGACTCAGTGTCTGATGAGAAAAAGGACAGTTGTCAATCAGTTGAAAGGGGACAAGTTAAGAGAAATGCCCGCAAATCTCCTACTGTGAAACCTGACAATGGGTCAATTTCAGGTTCTAACAAATCTAAACAGTGTCCAAAAAAGGTTTCAAACCACTCACCACTTTTAGGTCAGGAACACCCACAAAAGGAAATCGAGAAAATTAATCTTAAAAAAACTCGCATGCACAATGTTTCAGACAGATCTGAGGTTGTTAATGAGAAAAGAAAACACAGCGCTAGAAAAAATTCAGATCATGCTGCCGTTGATGTTTCTGAGCAGGGCCCGAATGCCTCTTCAGAGAAAATGAAAGATTCAACAGTGACAAAGTCAAAAGAGTCCGATCCTGAGAAAGATCTTGGACATAAAGCAAAAGACGAGAATGTTACTGAGCCACATAATGATCCTGTTGCTGTCTCACAGACTAGTGTGAAGAATGGTGGAGATGAAAGAATTCAAGGAGTTAGTGAAGACTCAAATGATGACGACAAAATTATCAGCAACAACTGCCAAAGAAGAGCTTCACTACCTGCTAATTTCAATGATCAAAATAATGAGGTCCATAACACTCCAAGACTGCCCAGTTATATGGCTCCTACTGAATCTGCAAAAGCTAAGCTAAGGGCTCAAGGTTCCCCAAGATTTGCTATTGATCTGGTAGACAAAAACAGTGTAACCAGGCGGCATTCACTTTCATCTTCGCTTAACGGCAGATCAGGTTCATTTTCCCCCAGAGCTGAAAGACTGATAGCCATGAGCAGCAGAGGAGCGATAAGGACTGATAGATCTTTGTCATCTTCTAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1683 0.4242 MGKGRSPGKWFKNLLLGKKSSSKSNSSKKNDIFKLSSDKDVLGASEVSLSDPTVDSLLISAPISGANATKGVLSEKEVVSRSSHDRDILTNGEEEAHAQATANIASQEDLEKLRLTEAAIKVQAACRGYQARRSFQTLKGIVPLQALIRGRLVRRQAVSALYCVKGIVKFQALARGYNVRCSDIGLEVLKIRKDAQCSNSVGVVTSTQAEKLSESVFVQKLLASSSFAFPLSLNGDLGEPNLAWKWLDRWTKSHFWAPLPELKKKLDSVSDEKKDSCQSVERGQVKRNARKSPTVKPDNGSISGSNKSKQCPKKVSNHSPLLGQEHPQKEIEKINLKKTRMHNVSDRSEVVNEKRKHSARKNSDHAAVDVSEQGPNASSEKMKDSTVTKSKESDPEKDLGHKAKDENVTEPHNDPVAVSQTSVKNGGDERIQGVSEDSNDDDKIISNNCQRRASLPANFNDQNNEVHNTPRLPSYMAPTESAKAKLRAQGSPRFAIDLVDKNSVTRRHSLSSSLNGRSGSFSPRAERLIAMSSRGAIRTDRSLSSSRDGTEKLIQPQWRR* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01038 560 PANTHER IQ-DOMAIN 5-RELATED 1 517 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 413 428 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 384 411 - -
Rops1g01038 560 Gene3D - 112 161 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 325 367 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 448 470 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 294 323 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 267 474 - -
Rops1g01038 560 Pfam Protein of unknown function (DUF4005) 462 536 IPR025064 -
Rops1g01038 560 MobiDBLite consensus disorder prediction 537 552 - -
Rops1g01038 560 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Rops1g01038 560 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Rops1g01038 560 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Rops1g01038 560 MobiDBLite consensus disorder prediction 507 560 - -
Rops1g01038 560 MobiDBLite consensus disorder prediction 430 447 - -
Rops1g01038 560 ProSiteProfiles IQ motif profile. 115 139 IPR000048 GO:0005515
Rops1g01038 560 MobiDBLite consensus disorder prediction 267 293 - -
Rops1g01038 560 SMART iq_5 114 136 IPR000048 GO:0005515
Rops1g01038 560 SMART iq_5 137 158 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01038 Rops-Chr1 24171464 24178220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01038 4 560 IQD Protein Family AT1G14380 34.106 4.08e-79 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01038 - - aprc:113869184 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01038 1 24171464 24178220 Rops1g01038 1 24171464 24178220 ECH
Rops1g01038 1 24171464 24178220 Rops2g03909 2 71653305 71661084 ECH