Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01037 ATGTCACTGCATTATTGTGATCATGAAATCTCACTCCTTTTAGAATCCCAGATTTTCTTTGCAAAGTTTCCTACCTGCTCCACATTATTGAAACTTTTAATTCTTGAGTTTGAGCCTCAGAATATGAAGAATTTCTTGGTTTCTTTATATTACTTGTTTCCTGCAATCATTGCAATCATTCTTGTGCTGCTTACTCCAATTCCCAGTGCACAGTTAACAACAAGTGAGAATAGAATTCTTCTCCAAGTTCAGATGCTTCTTGAATATCCTCAAGGATGGAACAACTTGACCAACTTCTGCAACCTCCCTCCCTCACCTTCTCTCAAGATTTTGTGCTCTAATGCTCATGTAACTGAATTAACAATCATTGGAAACAAGAGCTCCCCATCTTCTCATAGAACCCAGCAAGTTTCTTGGAATTCAGCTGAAACTCTTTCAGAAAGATTCTCCATTGATTCTTTCTTTACTATCTTGACAAAGCTTTCAAATCTGAAGGTGTTGTCATTGGTATCCCTTGGTTTGTGGGGTCCTTTACCATCCAAGATTAACAGGTTCTGGTCACTTGAAATGCTGAACATTAGCTCAAATTTCATTTATGGGGAAATCCCATCATCAATCTCCTCTTTGAAAAATCTCAAGAGTCTTGTTTTGGCTGACAATCTGCTCTATGGGAGTGTCCCTAATCTTAGAAGACTTGCCTCTCTTGAAGAGCTTAATTTGGGTGGCAACAAATTTGGTCCTGAATTCCCTTCAATGAGCAAGAATCTTGTGAGGATTATCTTGAGAAACAATTCTATGAGATGTCAAATTCCAACCCAACTCATGAACTTTTATAAACTTCAGCTATTTGATATCTCTTCTAATGAAATATTTGGAACCATCCCATCATTTCTTTTCTCTCTTCCGTTCCTCCAGTACCTAAACTTGGCTACAAACCAATTAAGTGGTTCTCTTTCTGTGAATTTATCCTGTAGTTCTGCTCTAACATTTGTTGATATCTCACACAACCTGCTGGTAGGAAAATTACCATCATGTATTGATTCAAAGTCCTCCAATAGAACAATACTGTATTCTGGAAATTGTTTGTCAACCAGAGGCTTAAATGATCAATATCCATCTTCATATTGCAAGAAAGTGAAGGCCTTAGCCGTTAAGCCACCTCTTAAAAACCAGAAGATGGAATTGAAGATGCAACTAGGCCTAGTAATTGGTATTATTGGAGGTGTTGTAGGAATTGCAGGGCTTTTGGTTCTACTCATTCTGTTCATCTTGAGAAAGTCCAAAGCAGAAAAGGCAGATAGTAACATAGAAAGATCTGTTGCTGTTGCTGATATATTTTCTGTCGGTGCATATACAAGACCAAATATTAATGCAAGACATGTTCCTCAGTTAACAAGACTAGCTGCACTTGGATTCCCATCATACAGCATTTTCACATTAGAAGAAATTGAAGATGCAACTAACAACTTGGACCCATCATATCTAATAGGAGAAGGGTCACAGGCACAGCTATATAGAGGTTGGCTCAGAGATGGTTCAATGGTCATGGTTAATTGTGTAAAACTAAAGCAGAAGAATTTGTCCAAAAACAATATTCAGAACTTTAAGGTATTACCTTATTTAAGGCACAGGCATTTAGTGAGTGTGCTAGGACACTGTGTCATCAATGATCAGGACCATCCCCAATCGACAAGCATAATATTCACTGTATTTGAACACATCTCAAACATGTCTTTGAGGGATCATCTGAGAGATAGGAGAAAGAAGGAAATGCTGAAGTGGCCACAAAGAATGGCAATCAGCATAGGCATTGCAAGAGGAATCCAGTTCTTACACACAGGAGTTAATCCTGGCATATTTGGCAACAATATAAAGATTGAGAACATTCTGATGGATGATACTCTCAATGCAAAAGTTAGTGGATACAGCATTCCATTGCCATCCAAGAAAGGTCTTGATAGCAAACTTAATAAACAAAGTGCCCCCAACAATATTGGCAGCATCAATAACGCAGAAAAAGAAGACATCTATCAGTTGGGTGTTATTTTACTTGAAGTTATCACTGGCAAACTAATTACGTCTTCTAGTGAAGTAGAGGAGCTGAAGTACGAGTTGGAGAGAGGTTTATCATCAGAAGATGCATCATCATCACCAACAACACTAAGGGGTGCAACAGATCCTTCCCTCCGCGGAACTTATGCATATGAATCATTAAAGACTGCAGTTCAGATCACCATCAGTTGTCTCAGCAAGGTTCCAAGTAATCGCCCTTCAATAGGGGATGTTCTTTGGAATTTGCAGTACTCCATGCAAGTTCAAGAGGCAAGAACCACCAGTGGAAACCTCAATATCAAATTGTAA 2361 0.3854 MSLHYCDHEISLLLESQIFFAKFPTCSTLLKLLILEFEPQNMKNFLVSLYYLFPAIIAIILVLLTPIPSAQLTTSENRILLQVQMLLEYPQGWNNLTNFCNLPPSPSLKILCSNAHVTELTIIGNKSSPSSHRTQQVSWNSAETLSERFSIDSFFTILTKLSNLKVLSLVSLGLWGPLPSKINRFWSLEMLNISSNFIYGEIPSSISSLKNLKSLVLADNLLYGSVPNLRRLASLEELNLGGNKFGPEFPSMSKNLVRIILRNNSMRCQIPTQLMNFYKLQLFDISSNEIFGTIPSFLFSLPFLQYLNLATNQLSGSLSVNLSCSSALTFVDISHNLLVGKLPSCIDSKSSNRTILYSGNCLSTRGLNDQYPSSYCKKVKALAVKPPLKNQKMELKMQLGLVIGIIGGVVGIAGLLVLLILFILRKSKAEKADSNIERSVAVADIFSVGAYTRPNINARHVPQLTRLAALGFPSYSIFTLEEIEDATNNLDPSYLIGEGSQAQLYRGWLRDGSMVMVNCVKLKQKNLSKNNIQNFKVLPYLRHRHLVSVLGHCVINDQDHPQSTSIIFTVFEHISNMSLRDHLRDRRKKEMLKWPQRMAISIGIARGIQFLHTGVNPGIFGNNIKIENILMDDTLNAKVSGYSIPLPSKKGLDSKLNKQSAPNNIGSINNAEKEDIYQLGVILLEVITGKLITSSSEVEELKYELERGLSSEDASSSPTTLRGATDPSLRGTYAYESLKTAVQITISCLSKVPSNRPSIGDVLWNLQYSMQVQEARTTSGNLNIKL* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01037 786 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 73 253 - -
Rops1g01037 786 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 574 781 - -
Rops1g01037 786 Gene3D Ribonuclease Inhibitor 254 385 IPR032675 -
Rops1g01037 786 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 398 774 - -
Rops1g01037 786 FunFam Putative LRR receptor-like serine/threonine-protein kinase 254 386 - -
Rops1g01037 786 SUPERFAMILY L domain-like 101 364 - -
Rops1g01037 786 Gene3D Phosphorylase Kinase; domain 1 465 560 - -
Rops1g01037 786 Pfam Protein kinase domain 495 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01037 786 Gene3D Ribonuclease Inhibitor 73 253 IPR032675 -
Rops1g01037 786 Gene3D Transferase(Phosphotransferase) domain 1 574 782 - -
Rops1g01037 786 SUPERFAMILY Protein kinase-like (PK-like) 472 766 IPR011009 -
Rops1g01037 786 ProSiteProfiles Protein kinase domain profile. 490 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01037 Rops-Chr1 24163589 24167136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01037 70 705 Miscellaneous Gene Families AT2G02780 49.849 1.21e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Rops1g01037 Pkinase 1.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01037 - - gmx:100800018 996.882