Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01034 ATGGAAGATCATAATAACTTCTTAGATTCTAATGGTGATGAAGAGATCGGTAGCAAGAAGATGCAGGATCAAAAGCTTGAATCAGCTAAAGGGGAAATGGGTGAAATTAGAGAAGAAAACAAGAGGTTGAAGTTCTTATTTGTAAATGATTATCAATCAATGCAAAGGGACTTCTTTGACATCCTTCAACAAGATAAACCAAAAGAGGATACAAAAGTTGCAAGTGTAGCACCTAACCATGAAGAAAGTGAACTTGTTTCCCTTTCTCTTGGGATATCATCCCAAGGCCAACCTAGAATGGATGAGAAAAAGAATAGCAATGAAAAGAGAGAAGATGAGGCTGTGGATAAAGGACTTGCACTTGGGTTAGATATCAAATTTAACCCTGTAATTCAAATTGATGCTACAAATAATCCCAGCCCAGAAAGTAGCCTTGATGAGAAAGGGAAGGAAGAGGCACCAGTCGAGATGTGGCCACCCAGTAAAGTTTTGAAGACAACGAAAATTGGAGATAAAAGTGAAGCTTCTCAGCATACTCAGCTCAAGAAGGCTAGGGTTTCCATTAGAGCCAGATGTGACTCTCAAACGATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAACAGCAAAAGGAAATCCATGCCCCCGAGCTTACTATCGATGCACTGGTTCTCCATCTTGTCCTGTAAGAAAACAGGTGCAAAGATGTTCTGAGGATATGTCCATATTGATTACCACCTATGAAGAAATCCACAATCACCCACTTCCTATTTCAGCCACTGCTATGGCCTCCACAACTTCTGCAGCTGTTTCCATGCTTCAATCTCCCTCATTGAGTTCACAAGAAGGACTAGCCACTTCAGATATAGCCCCCATTATCAATTCTAGTGCTGCTTACAACCCTAATGCTATAAACTTCTCCACACACAAAATTTCAAGACCACATCAATTCTACTTCCCCAACTCTTCTATTTTAACATTGAATTCTCACCCCACAATCACTCTGGACCTAACTGCATCACCAACTTCCTCTAATTCTGGAAATTTTACCTTCATACCAAAATATTCATCAACAAACCTTAATTTTTCCTCATCAGGTTTCTCTCCTCTACAATCTTCTAGCATGCCACAGTCACCTTGGAGCAGTTTTAGTGGGAATTACTTCAACTATGGAACTGGAACATTAACCCAAATTAAAAACCAAGGTGGTCACTTTTTATGCACTGGAAAACAACCATCTCATGAGGGGCATCTTCATTATCAACCTATTTACATGAACAACCATACCATTTCTCAACAGTGTTTGACAGATTCCATTGTTGCTGCTGCAACAAAGACAATCACAACCAACCCAAGATTTCAATCAGTATTAGCTAATGCTCTCACAACATATGTTGGCAATGGAGCTGGTGATGGTGGTTGGTTAAGAGAAAATCATGTTCTTGAGAGTGCACCACTGAACTTGAAGACAAGTGGTGGAGATGTGTCCTTCACTTGTAGCCAAAATAGCATAGGATGTGCATCATCAAGGTACTTGGATATGTCTTCCTCAGCTCTTAACTCTCAACAAGGAAACTCGATTGTATTTCCACCATTAGCATCAGGGTCTAAAAGTACCTCTGGCTCTTCTTCTAATTAA 1644 0.4009 MEDHNNFLDSNGDEEIGSKKMQDQKLESAKGEMGEIREENKRLKFLFVNDYQSMQRDFFDILQQDKPKEDTKVASVAPNHEESELVSLSLGISSQGQPRMDEKKNSNEKREDEAVDKGLALGLDIKFNPVIQIDATNNPSPESSLDEKGKEEAPVEMWPPSKVLKTTKIGDKSEASQHTQLKKARVSIRARCDSQTMNDGCQWRKYGQKTAKGNPCPRAYYRCTGSPSCPVRKQVQRCSEDMSILITTYEEIHNHPLPISATAMASTTSAAVSMLQSPSLSSQEGLATSDIAPIINSSAAYNPNAINFSTHKISRPHQFYFPNSSILTLNSHPTITLDLTASPTSSNSGNFTFIPKYSSTNLNFSSSGFSPLQSSSMPQSPWSSFSGNYFNYGTGTLTQIKNQGGHFLCTGKQPSHEGHLHYQPIYMNNHTISQQCLTDSIVAAATKTITTNPRFQSVLANALTTYVGNGAGDGGWLRENHVLESAPLNLKTSGGDVSFTCSQNSIGCASSRYLDMSSSALNSQQGNSIVFPPLASGSKSTSGSSSN* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01034 547 Gene3D WRKY domain 182 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops1g01034 547 MobiDBLite consensus disorder prediction 133 155 - -
Rops1g01034 547 SUPERFAMILY WRKY DNA-binding domain 191 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops1g01034 547 MobiDBLite consensus disorder prediction 70 114 - -
Rops1g01034 547 Coils Coil 19 39 - -
Rops1g01034 547 FunFam probable WRKY transcription factor 31 182 259 - -
Rops1g01034 547 MobiDBLite consensus disorder prediction 1 34 - -
Rops1g01034 547 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 478 IPR044810 GO:0003700
Rops1g01034 547 ProSiteProfiles WRKY domain profile. 192 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g01034 547 Pfam WRKY DNA -binding domain 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g01034 547 SMART WRKY_cls 197 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g01034 547 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01034 Rops-Chr1 24150279 24155571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01034 33 341 WRKY Transcription Factor Family AT5G15130 45.294 8.93e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops1g01034 WRKY 4.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01034 - - lang:109339108 635.95