Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01030 ATGTTGCAACCACACTCCATTACCTTTAAGCCATGTTCAATCCCAACCCACTATTTGTTCACTCCAAAGTCCTTTCCTTTAGGACTTGCTGGTGCTGCTTCTATACACAAACACACACCCACCTTGTCCCTCACTGTTAAATGCCGCCACCAAGAGTTCTTTGACCCCACAGGACGATACCCTTCACCTCCACCACAACGCTCTCAACCAGTTAAAGATTTGCCGCCCAGAGTTTATGTGGGTCACACCGTTTACAAAGGGAGAGGTGTACTCACGGTGTCTCCTAGACCTCCGGAATTTACTGCATTAGATTCTGGAGCATTCAAAGTATCTAAGGAAGGTTTTCTTCTGCTCCAGTTTGCTCCTGCAGCTGGTATGCGCCAATATGATTGGAACAGAAAGCAGGTATTCGCACTGTCAGTGAGTGAAATGGGGACTCTAATTAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTTAAGGGAAAAAGTGATGAAGGTAAACTCAGAAAAGTTTTGAAGGTGGAGCCACTTCAGGATGGTTCTGGTCACTTGTTTAACTTAAGTGTTCAAAACAAGCTTGATAACATGGACGAAAGAATCTTTATCCCTGTTACAAAAGCAGAGTTAGCAGTTTTCAGATCGATTTTCAATTATATCATGCCATACCTTCTAGGTTGGCATGCCTTTGGAAACAACATAAAGCCAGAGGTTCAAGATTTAGCCAAGGTTCAGCCAACTCCAATGAAACATGCGGAAGGAGAGGTCAACAATATTGCTTTTGTGGAGAATTTGTTGAAATGCATACTGCTTGGACAATGA 831 0.432 MLQPHSITFKPCSIPTHYLFTPKSFPLGLAGAASIHKHTPTLSLTVKCRHQEFFDPTGRYPSPPPQRSQPVKDLPPRVYVGHTVYKGRGVLTVSPRPPEFTALDSGAFKVSKEGFLLLQFAPAAGMRQYDWNRKQVFALSVSEMGTLISLGARESCEFFHDPFKGKSDEGKLRKVLKVEPLQDGSGHLFNLSVQNKLDNMDERIFIPVTKAELAVFRSIFNYIMPYLLGWHAFGNNIKPEVQDLAKVQPTPMKHAEGEVNNIAFVENLLKCILLGQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01030 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 66 252 IPR013742 GO:0003697|GO:0006355|GO:0006952
Rops1g01030 276 Gene3D Transcriptional Coactivator Pc4; Chain A 71 248 IPR009044 GO:0003677|GO:0006355
Rops1g01030 276 Pfam Whirly transcription factor 84 219 IPR013742 GO:0003697|GO:0006355|GO:0006952
Rops1g01030 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 76 245 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01030 Rops-Chr1 24120182 24131828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01030 29 240 Whirly Transcription Factor Family AT1G14410 63.063 2.37e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Rops1g01030 Whirly 3.8e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01030 K26559 - pcin:129310571 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01030 1 24120182 24131828 Rops1g01030 1 24120182 24131828 ECH