Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01027 ATGGAGCTTGCTGCTGTAAAATCTGAATCAAACCCAACAAGTCATAGAATGCTCATTATGGATGGTGAGAGTAATGCTAGTAATGGTGTCAAAAGGAAGAGAAGAGACTCAACTATGGGAGTGTTAAGGGTCAATGAACAGCAATGTAAACAATTACAAGAGCAGCAGCCACCGGGTGACCAATCTAACACCATCAGTGTGAAGAGAAGTTCAAGGTTTAGGGGAGTAAGCAGACATAGGTGGACTGGGAGGTTTGAAGCCCATCTATGGGATAAAGGGACATGGAATCCGGTTCAGAAAAAGAAAGGAAAGCAAGGGGCTTACAATGATGAAGAAGCTGCTGCGAGAGCTTATGATTTGGCTGCGGTCAAGTATTGGGGAATATCAACTTTAACAAATTTCCCAGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACAAGAGAAGAATATCTTGCTTCATTAAGAAGGAGAAGCAGTGGCTTTTCTAGAGGTGTATCAAAGTACAGAGGAGTGGCAAGGCACCATCACAACGGAAGATGGGAAGCAAGGATAGGGCGAGTGTTTGGAAACAAGTACCTCTACCTAGGGACTTATAGTACACAAGAAGAGGCAGCTCGGGCATATGATATTGCAGCAATTGAATACAGAGGAATAAGTGCAGTGACAAACTTTGACTTGAGCACTTACACCAGATGGCCAAGACCAGGTGCTCATTCTACTGCTTCTCAAGAGCAAAAGCCAAGTACAGATCCTCAACCCTTTACAACTCCTAACCTCATCCAAACTAGAGAAACGTCTAAAGTATCCAACTTCAACATCCATCCATTCCCAGGAGGTGAATTGGACAATAACAAAAAGCAAGAAAGTTCCCAGTATATGACCCCTTTAAGTCCTTGCAATAAATCTGCTTCCTCAACAGCATTAGGACTTCTTCTAAAATCCTCAGTATATAGAGAACTGATGCAGAGAAATCTGAATCCTGCCAATGAAGAAGCTGAAGAAATTGAATTGAAAAGCACACAAGAAGGAACTGATGGGGTTGGAGGGATTTTGAGTAATGAAAGTGGCAGTACATCTTACAAATGTTCTTCCAGTTTACCTGACTTACCTGACTTGGTGTCACCAGAAGAGAGCACATTGCCACTGTATCATTGTACCGTGCCATACCCCTATAATACGGTGCTTTAA 1200 0.42 MELAAVKSESNPTSHRMLIMDGESNASNGVKRKRRDSTMGVLRVNEQQCKQLQEQQPPGDQSNTISVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPVQKKKGKQGAYNDEEAAARAYDLAAVKYWGISTLTNFPVSDYEKEIEIMKTVTREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGISAVTNFDLSTYTRWPRPGAHSTASQEQKPSTDPQPFTTPNLIQTRETSKVSNFNIHPFPGGELDNNKKQESSQYMTPLSPCNKSASSTALGLLLKSSVYRELMQRNLNPANEEAEEIELKSTQEGTDGVGGILSNESGSTSYKCSSSLPDLPDLVSPEESTLPLYHCTVPYPYNTVL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01027 399 SMART rav1_2 72 141 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 Coils Coil 322 342 - -
Rops1g01027 399 Pfam AP2 domain 71 127 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 Pfam AP2 domain 170 221 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 38 295 - -
Rops1g01027 399 ProSiteProfiles AP2/ERF domain profile. 72 135 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 SUPERFAMILY DNA-binding domain 170 231 IPR016177 GO:0003677
Rops1g01027 399 SUPERFAMILY DNA-binding domain 71 137 IPR016177 GO:0003677
Rops1g01027 399 MobiDBLite consensus disorder prediction 287 305 - -
Rops1g01027 399 CDD AP2 170 231 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Rops1g01027 399 Gene3D AP2/ERF domain 71 137 IPR036955 GO:0003700|GO:0006355
Rops1g01027 399 MobiDBLite consensus disorder prediction 238 305 - -
Rops1g01027 399 MobiDBLite consensus disorder prediction 51 70 - -
Rops1g01027 399 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Rops1g01027 399 FunFam AP2-like ethylene-responsive transcription factor 170 231 - -
Rops1g01027 399 MobiDBLite consensus disorder prediction 238 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01027 Rops-Chr1 24094843 24097350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01027 41 233 AP2-EREBP Transcription Factor Family AT5G57390 61.616 1.07e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops1g01027 AP2 1.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01027 - - gmx:100799621 567.77