Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01026 ATGCAGAAGGTGAACGCAGTGCTTGAGGATTCATATTGGAAGGAAAGAGCAGTAATTGCTGCAAAGGCAACCGATGAAGCTTATAATCCTGACCCATATGCAGTCTCTGGCAACCTGACTAGTAGCATAAGCGAAATGATAGTTGGTGGCAATAAAGGAAGAAGGAACCTTGGGGGACGTAGAGGTGGTGCATGCATGGCAACCAACCCCATAGACAGGTGTTGGAGGTGTGACCCTAACTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGAAACACCATTGGTGGAAAGAATGGTCCAATCTATGTGGTAACTGATTCCTCAGATAATGACATGCTCAATCCAGTTGCAGGTACCCTTAGGCATGCAGTTACAAGAAATGGACCCTTATGGATTATCTTTGCTCATAGCATGACCATTAGACTCAACCAGGAGCTCATAATTAGTAGTGATAAGACCATTGATGGGCGAGGAGTTGATGTTTACATTGCTAATGGGGCTGGTCTTACCATCCAGTATGTCCAGAATGTGATCATCCATGGGATCAAAATTTTTGACATTGTGGTTGGCAATGGTGGACTTATTAGAGATTCTGAGAACCATTTTGGTCTTAGGACTGCGAGTGATGGTGATGGAATTTCCATTTTTGGTTCCAGCAACATTTGGATTGATCATGTTTCCATGAGAAACTGCAGAGATGGACTGATAGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATGGCCATTTCACAGACCACAATGAGGTGATGCTGTTTGGTGCCAGTGATGCCTATGATACTGATAAGAAAATGCAGATCACACTGGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGTTTCATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCTATTGGTGGTAGCATGCATCCTACCATTATTAGTGAGGGTAACAGATTCATAGCCCCAGACAACGGTTATGCTAAAGAGATTACAAAGAGGGAGTATTCACCAGAGGAAATATGGAAAAACTGGCAATGGAGATCAATCAATGATGAGTATATGAATGGAGCATTTTTCAGACAAAGTGGGCCTGAACTGACCAACAGACCATTCACAAGGTATGACATGATCAAAGCTAAGCCAGGGTCATATGTTGGAAGGCTCACTCGTTATGCTGGAAGCCTTAACTGCAGAGTTGGTCAGCCTTGTTAA 1257 0.4352 MQKVNAVLEDSYWKERAVIAAKATDEAYNPDPYAVSGNLTSSISEMIVGGNKGRRNLGGRRGGACMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPIYVVTDSSDNDMLNPVAGTLRHAVTRNGPLWIIFAHSMTIRLNQELIISSDKTIDGRGVDVYIANGAGLTIQYVQNVIIHGIKIFDIVVGNGGLIRDSENHFGLRTASDGDGISIFGSSNIWIDHVSMRNCRDGLIDAIMGSTAITISNGHFTDHNEVMLFGASDAYDTDKKMQITLAFNHFGKRLIQRMPRCRWGFIHVVNNDYTHWEMYAIGGSMHPTIISEGNRFIAPDNGYAKEITKREYSPEEIWKNWQWRSINDEYMNGAFFRQSGPELTNRPFTRYDMIKAKPGSYVGRLTRYAGSLNCRVGQPC* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01026 418 PANTHER PECTATE LYASE 18-RELATED 21 416 IPR045032 GO:0030570
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Rops1g01026 418 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Rops1g01026 418 SMART amb_all 143 340 IPR002022 -
Rops1g01026 418 SUPERFAMILY Pectin lyase-like 69 409 IPR011050 -
Rops1g01026 418 Pfam Pectate lyase 152 334 IPR002022 -
Rops1g01026 418 Pfam Pectate lyase, N terminus 10 57 IPR007524 GO:0030570
Rops1g01026 418 Gene3D - 68 411 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01026 Rops-Chr1 24087066 24091980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01026 5 418 Polysaccharide Lyase AT1G14420 62.791 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01026 K01728 - gmx:100796307 709.523