Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01015 ATGACGGAGTTAGAATCAAAGTTAGTTGCAATAGAACGATCCTTCAACGACCGTTACTCTCGCCACGCGCGCGAGTCGCTCGACGAATTGACTGAGAATTTCACCATCACCGACCCTTCGGTTTCGGGTCACCCAATAATTTTCGCCAGCCTCGGGTTTTTGAAGATGACTGGTTTCACGTGCGACGAGGTTATTGGGAACAGTGGGGCCATGTTTCAAGGGAAAGGAACTTGCAGAAGGTCGGTGATGAAGATTCGAGAAGCTGTTAGGGAAGAAAAAGAGGCTCAGGTCGTTTTGTTGAATTATCGAAAAGACGGCACGCCGTTTTGGATGTTGCTTAACGTTTGCCCTGTTTTCAGTGCTAACGGCGGTGCCGTCGTTCACTTTGTTGCCGTTCAGGTGCCGCTTCAACGGAGAAGAAGGGTTTCTGGTGGTGGAGGGGTTTTTTCTTCACAGGTGAATGATTATATGTTCCGATGTTGTCGGAAGGAAGTGTGCTCTGATTCTTTGGCAGAACTTGATCGTGTTTCTTCTTCCCTTGATCAAGTGTTGGAACATGATATTTCAGAATTGGAGATTGAGGAGCCGTGTGAGGCAAGTGATGTTGAAAAGAGAAGCGCTGTGACTGCTATGGACAACATCTTTTCGGTGCTAACCTACTACAGCGAGTCGATGGGCAGATTGGTGTGTAGAAAGAGAAGCAGCATTCCTGACATGGGTCGTCTTAGCTCATCATTGATTATTGCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTGCCAGACATGCCTATTGTTTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTACGCAAGAGATGAAGTGCTGGGCTGCAACTGTAGATTTTTAGGTGGAACACACACTGATACCTCAACTTTACATGTGATAAGGGAAAGCATTAAAACTGAGCAATCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATCTCACCTGTTCGTGATGCTACTGGCAAGGTAGCGTACTTTGTGGGCGTTCAAATAGAAGATGACTATAAAAATGGGGATACACAGTGTTTGAACCCTGAGAGGAGCCAACTTAGGGTGGTTGGTGGAGTCAGGGTTGCTGTGAGGAGTTTAGCAATGACTGCCGGATCGTCCAAGTCACAGTCATAA 1200 0.455 MTELESKLVAIERSFNDRYSRHARESLDELTENFTITDPSVSGHPIIFASLGFLKMTGFTCDEVIGNSGAMFQGKGTCRRSVMKIREAVREEKEAQVVLLNYRKDGTPFWMLLNVCPVFSANGGAVVHFVAVQVPLQRRRRVSGGGGVFSSQVNDYMFRCCRKEVCSDSLAELDRVSSSLDQVLEHDISELEIEEPCEASDVEKRSAVTAMDNIFSVLTYYSESMGRLVCRKRSSIPDMGRLSSSLIIALGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGCNCRFLGGTHTDTSTLHVIRESIKTEQSCTVRILNYRKDKSSFWNLLHISPVRDATGKVAYFVGVQIEDDYKNGDTQCLNPERSQLRVVGGVRVAVRSLAMTAGSSKSQS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01015 399 FunFam protein TWIN LOV 1 256 392 - -
Rops1g01015 399 NCBIfam PAS domain S-box protein 46 127 IPR000014 -
Rops1g01015 399 NCBIfam PAS domain S-box protein 269 354 IPR000014 -
Rops1g01015 399 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 130 IPR035965 -
Rops1g01015 399 CDD PAS 265 354 IPR000014 -
Rops1g01015 399 Gene3D PAS domain 256 397 - -
Rops1g01015 399 Gene3D PAS domain 33 216 - -
Rops1g01015 399 SMART pac_2 319 361 IPR001610 -
Rops1g01015 399 SMART pac_2 96 139 IPR001610 -
Rops1g01015 399 Pfam PAS domain 256 355 IPR000014 -
Rops1g01015 399 Pfam PAS domain 44 133 IPR000014 -
Rops1g01015 399 ProSiteProfiles PAS repeat profile. 269 289 IPR000014 -
Rops1g01015 399 FunFam Protein TWIN LOV 1 isoform D 33 220 - -
Rops1g01015 399 SUPERFAMILY PYP-like sensor domain (PAS domain) 259 355 IPR035965 -
Rops1g01015 399 PANTHER PROTEIN TWIN LOV 1 5 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01015 Rops-Chr1 23870707 23874962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01015 246 357 AGC Kinase Gene Family AT5G58140 49.107 2.16e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01015 - - gmx:100785562 572.392