Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01012 ATGGCTAGTGGCAAGCTTTTTGGGGGTTCAAACATGTCACTTTTGCTCCAAAATGAAAGGCTTCCTTGCTCCTCTGAAGTTCTCGAGTCTCTTTGGGTTCACACCTCTAACCCTGCTTCTTCTTTCCAAGGTTCAAAATCGGTGGTTGATTTTGAGAATGTTAATGGCAACAGGGTCACAGATAGGCCCTTCTTTCAACCACTTGAAAAGGAAGAGAACGTTGATGAGGATTATGAGGGGTGTTTCTATCAACCGGGAAAGAAAAGGAGGCTCACAAGTGAGCAAGTTCAGTTCCTTGAGAGGAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAGGTTCAGCTTGCTAAGGAACTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAAACCAAACAGCTAGAAAAAGATTATGGCACATTGAAAGCAAGCTATGACAAACTCAAAGGTGACTATGAAAATCTTCTTCAAGAGAGTGACAAGTTAAAAGAAGAGGTGAATTCTCTCAAGAACAAATTGATTCCAAGAGATAAAGAGAAAGAGAATTCAGATGACAAGTCATCATCCCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATCTCAATTGCAAATTCTGAAAATGGGTCCAAAGTGCCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCTAGAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCACTCCTCATTTGTGGAGCCTGCAGATTCCTCCCATGCTTTTGAACCAGACCAGTCAGATTTCTCACAAGATGAAGAGGATAACCTTAGTGAAAACCTTTTGACCCTCCCATGTTTACCAAAGGTTGAAGATGCATGTTATGATGACCCTCCTGAAAACTCTTGCAATTTTGGGTTCCCTGTTGAAGATCAAACCTTCTGTTTCTGGCCCTACTGA 990 0.4283 MASGKLFGGSNMSLLLQNERLPCSSEVLESLWVHTSNPASSFQGSKSVVDFENVNGNRVTDRPFFQPLEKEENVDEDYEGCFYQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDKLKGDYENLLQESDKLKEEVNSLKNKLIPRDKEKENSDDKSSSPDAVNSPHKEPMDLISIANSENGSKVPLPIMVTCKQEDANSARSDVLDSDSPHCTDGNHHSSFVEPADSSHAFEPDQSDFSQDEEDNLSENLLTLPCLPKVEDACYDDPPENSCNFGFPVEDQTFCFWPY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01012 329 Coils Coil 148 182 - -
Rops1g01012 329 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Rops1g01012 329 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Rops1g01012 329 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Rops1g01012 329 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Rops1g01012 329 MobiDBLite consensus disorder prediction 240 260 - -
Rops1g01012 329 FunFam Homeobox-leucine zipper protein HAT5 81 144 - -
Rops1g01012 329 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Rops1g01012 329 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Rops1g01012 329 Gene3D - 82 148 - -
Rops1g01012 329 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Rops1g01012 329 MobiDBLite consensus disorder prediction 240 254 - -
Rops1g01012 329 MobiDBLite consensus disorder prediction 180 197 - -
Rops1g01012 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 233 IPR045224 GO:0003700
Rops1g01012 329 MobiDBLite consensus disorder prediction 180 209 - -
Rops1g01012 329 CDD homeodomain 85 143 IPR001356 GO:0003677
Rops1g01012 329 SMART HOX_1 84 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01012 Rops-Chr1 23703406 23705328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01012 22 275 Homeobox Transcription Factor Family AT3G01470 39.768 1.79e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops1g01012 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01012 - K09338 adu:107489132 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01012 1 23703406 23705328 Rops1g01012 1 23703406 23705328 ECH
Rops1g01012 1 23703406 23705328 Rops1g01012 1 23703406 23705328 PCT