Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01010 ATGAGTCGTAAGAGAGACAAACCCTACTTTTCCCGCCACGCCGCCAAGCGCCGCCGCCCATTGCCGGAGCCGGAGGAGGAGAAGCCGGCGATGAGGCCAGCGCCGCCTTCCGCGGTGGTTGTCATGGGCCTTCCTATGGACTGCTCTGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCACCATCTCACGCATCCGCATCGACCGTGACGCCGTCGGCTACATCACCTACCGGAATAAAGACTCCGCCGACGCCGCCATCGCCGCCGGTCTCGACCCTTCTTTCGGAATCACTGTCAACTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCAATGTGGAGGGAAGGAGTTGGTAACAACAAAGATAAAGGGTCAATGTCAAAGCTTGTGCGTGCTGAGGTACCATTGAGTAGGCACGGAAGAGGCAATAGACTCGCTTCAGCGATAGGGAATACCAAAAGTAGTGAGGATAACTCAGGTGGTAGCTCAGTTCTTGAAGTGCCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCCTGTAA 558 0.5448 MSRKRDKPYFSRHAAKRRRPLPEPEEEKPAMRPAPPSAVVVMGLPMDCSVLDLKSRFEIYGTISRIRIDRDAVGYITYRNKDSADAAIAAGLDPSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKGSMSKLVRAEVPLSRHGRGNRLASAIGNTKSSEDNSGGSSVLEVPFKGREIVAYDDIL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01010 185 MobiDBLite consensus disorder prediction 1 15 - -
Rops1g01010 185 SMART rrm1_1 38 108 IPR000504 GO:0003723
Rops1g01010 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 89 IPR000504 GO:0003723
Rops1g01010 185 Gene3D - 2 114 IPR012677 -
Rops1g01010 185 PANTHER GEO13361P1-RELATED 33 139 - -
Rops1g01010 185 MobiDBLite consensus disorder prediction 1 34 - -
Rops1g01010 185 MobiDBLite consensus disorder prediction 16 30 - -
Rops1g01010 185 SUPERFAMILY RNA-binding domain, RBD 19 118 IPR035979 GO:0003676
Rops1g01010 185 MobiDBLite consensus disorder prediction 151 166 - -
Rops1g01010 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 112 IPR000504 GO:0003723
Rops1g01010 185 CDD RRM_SF 39 107 - -
Rops1g01010 185 MobiDBLite consensus disorder prediction 147 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01010 1 185 Homeobox Transcription Factor Family AT1G27050 53.140 6.23e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01010 - - ccaj:109806897 310.071