Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00999 ATGGGTCTTGGTGACTACTACAAGATACTCAAGGTAAACCATGATGCCACTGATGAAGAGTTAAAGAAGGCTTATAAGAAGTTGGCAATGAAATGGCACCCAGATAAGAACAACCATCAATTCCCTCATAGGAAAGAAGAGTTTGAAGCCAAGTTTAAACAGATATCTGAGGCCTATGATGTGCTTAGTGACCCCAAGAAGCGCCAGATCTATGACCTCTATGGTCACTATCCTCTTAAAGTTCATCGTTTCAGTAAGGAAAATGGTGATGGGGTTGTTGGGAATTTGAAGGAAGATAAAGCAACTGGGATGGTTGAAAGCAGGTTGATATGTACCCTTGAGGAGCTTTACAAAGGTTGCAGAAGGAAGTTGAAAATCTTAAGGACTGTTCCTGATGAATTTGGAAAGTTAAAGTCTGTAGAAGAAATCTTGAAGATAGATATTAAACCTGGTTGGAAGAAGGGCACAAAAATCACTTTTCCTGGGAAAGGCAACCGAGAACAAGGAGCTGCTCCAGCTGATTTAATTTTTGTGGTTGATGAGAGACCACATGCTTTTTTCAAGAGGGATGGAAATGATTTAGTAGTGATCCAAAAGATATCACTTCTAGATGCTCTCATTGGAAAGACTCTCAACTTGACAACCTTGGATGGAAGAGATATCACAATCCAAGTGACTGATATTGTGAAACCAGGCTATGAGCATGTGGTCCCAAATGAAGGGATGCCCATTTCAAAGGAACCTAGCAAGAAAGGAAATCTAAGAATTAAGTTTGATGTTATGTTTCCATCAAGGCTTACCACACAACAGAAATGTGATCTAAGAAGGATTCTGAGTGATGCTGATAGCTAA 852 0.3991 MGLGDYYKILKVNHDATDEELKKAYKKLAMKWHPDKNNHQFPHRKEEFEAKFKQISEAYDVLSDPKKRQIYDLYGHYPLKVHRFSKENGDGVVGNLKEDKATGMVESRLICTLEELYKGCRRKLKILRTVPDEFGKLKSVEEILKIDIKPGWKKGTKITFPGKGNREQGAAPADLIFVVDERPHAFFKRDGNDLVVIQKISLLDALIGKTLNLTTLDGRDITIQVTDIVKPGYEHVVPNEGMPISKEPSKKGNLRIKFDVMFPSRLTTQQKCDLRRILSDADS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00999 283 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Rops1g00999 283 Gene3D DnaJ domain 4 106 IPR036869 -
Rops1g00999 283 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Rops1g00999 283 CDD DnaJ 5 64 IPR001623 -
Rops1g00999 283 SUPERFAMILY Chaperone J-domain 3 82 IPR036869 -
Rops1g00999 283 FunFam Dnaj homolog subfamily b member 101 182 - -
Rops1g00999 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 107 194 IPR008971 GO:0006457|GO:0051082
Rops1g00999 283 CDD DnaJ_C 105 266 - -
Rops1g00999 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 278 - -
Rops1g00999 283 SMART dnaj_3 4 67 IPR001623 -
Rops1g00999 283 Gene3D - 184 264 - -
Rops1g00999 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 186 271 IPR008971 GO:0006457|GO:0051082
Rops1g00999 283 Gene3D - 107 182 - -
Rops1g00999 283 Pfam DnaJ domain 5 72 IPR001623 -
Rops1g00999 283 FunFam DNAJ heat shock family protein 183 278 - -
Rops1g00999 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Rops1g00999 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Rops1g00999 283 PRINTS DnaJ domain signature 67 86 IPR001623 -
Rops1g00999 283 PRINTS DnaJ domain signature 47 67 IPR001623 -
Rops1g00999 283 Pfam DnaJ C terminal domain 106 263 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00999 Rops-Chr1 23485893 23488258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00999 6 74 C2H2 Transcription Factor Family AT1G74250 34.783 9.04e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00999 K09510 - gmx:100778440 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00999 1 23485893 23488258 Rops1g00999 1 23485893 23488258 ECH
Rops1g00999 1 23485893 23488258 Rops1g00999 1 23485893 23488258 PCT