LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g00982	ATGGAGACAATCCTGGAAGAATCATTTGTTCAGTTGAATGATGATGCGGATGTGAATGAGGAGTGTCCAACGACAGATTCTGATAATGGGGTTCAGAAAGATGGTGTTTATAAGAGTGTGACAGAGTTGAATGATGATGATATCTTACATTTAGAGTTTGGCAGTGAAGAGGAAGCTATAGAATTTTATAAAATGTATGCAATGTATCATGGATTTGTTAGGAAAGATGATGTGTATAGAGATGTGAAGGGGAAAGTTGTGATGCGGCAATTAGTATGCAATCGATCTGGTTTAAGAAACAAGAAACATATTGAAAGGGTGGACAGAATAAGAGACCATAAACCAATCACGCGGACGAATTGTGATGCAAAGTTTAGGGTCCATTTTAACTACAGTAGTCTGAAATGGAGGGTCGTCTCTTTTCAGAATTCACATAACCATCAACTTACACCACCGGAACATGTTCACCTACTACCTGCTTATCGTAGGTTGACATATGCTGATCAAGCTCAAGTTGATAGCTTGCATCATTATGGTGTGAGGTCATGTCATATATTGGGTTTCATGGTAGGCCAGAAAGTGAACGACGCGAAAGTAAAATTGGTAACTGGAACCGTGTGTATGGCATTTGGGGCGCAGTAA	642	0.3972	METILEESFVQLNDDADVNEECPTTDSDNGVQKDGVYKSVTELNDDDILHLEFGSEEEAIEFYKMYAMYHGFVRKDDVYRDVKGKVVMRQLVCNRSGLRNKKHIERVDRIRDHKPITRTNCDAKFRVHFNYSSLKWRVVSFQNSHNHQLTPPEHVHLLPAYRRLTYADQAQVDSLHHYGVRSCHILGFMVGQKVNDAKVKLVTGTVCMAFGAQ*	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g00982	213	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	18	184	-	-
	Rops1g00982	213	Pfam	FAR1 DNA-binding domain	61	150	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g00982	Rops-Chr1	23328142	23334552	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Rops1g00982		FAR1	4.4e-18	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g00982	-		-	ccaj:109792835	221.09