Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00962 ATGGATCCAGCAGCAATGATGAACGGTGGGGCCAACACGGCGTCGTTTCACTTAGCAGAGATCTGGCAGTTTCCGCCGCCGAATGGGGCGGAGTCTGGCGGTAGGTTGGGGCTGAGGAGGCCGCAGTTCGGGCACGGGTTTGAGGATTTAGCCACGTGTCCGACCCGGGATGATCCGGGTACTGACCCGAACCATAGCCATAACAGGAAAAGGCGAGAACTTGAGGAAGAATCGGTTAAGGGCGTTTCCACCAGCAATGGCGGTGGCAATGGCAATGGCAATGGCGTGGTGGTGCAGAATGATGGTGGTGATGGAAAGAGGATTAAGACCTCAGGGAATAAGAATGAGAGCACTACTAAAGGTGAAGCAGAACCCAGTTCAGGAAAGCTTGCGGAGCAAACTACTAACCCACCTCCTGAGCCTCCAAAGCAAGACTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGGGCTAGAAGGGAAAAAATAAGTGATAGGATGAAAATTCTTCAAGATTTAGTCCCTGGTTGCAATAAGGTTCTTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCGCTTCAGCGCCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGACTGACCCCTGGCATTGAAGTGTTCCCTCCTAAAGATTTTGATCAGCAACCATTTGATACAACCACCATGCCATTTGCTTCACAAGCTACCAGAGAGTATAGCCGGGGTTCATCACCAGATTGGTTACATATGCAGGTGGGAGGTGGGTTTGAAAGAGCAACATAG 831 0.4898 MDPAAMMNGGANTASFHLAEIWQFPPPNGAESGGRLGLRRPQFGHGFEDLATCPTRDDPGTDPNHSHNRKRRELEEESVKGVSTSNGGGNGNGNGVVVQNDGGDGKRIKTSGNKNESTTKGEAEPSSGKLAEQTTNPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVLGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKDFDQQPFDTTTMPFASQATREYSRGSSPDWLHMQVGGGFERAT* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00962 276 Coils Coil 202 222 - -
Rops1g00962 276 FunFam Basic helix-loop-helix transcription factor 152 224 - -
Rops1g00962 276 CDD bHLH_AtBPE_like 145 230 - -
Rops1g00962 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983
Rops1g00962 276 MobiDBLite consensus disorder prediction 23 145 - -
Rops1g00962 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 223 IPR036638 GO:0046983
Rops1g00962 276 MobiDBLite consensus disorder prediction 114 134 - -
Rops1g00962 276 Gene3D - 152 225 IPR036638 GO:0046983
Rops1g00962 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 248 IPR024097 GO:0006355
Rops1g00962 276 MobiDBLite consensus disorder prediction 80 97 - -
Rops1g00962 276 Pfam Helix-loop-helix DNA-binding domain 159 206 IPR011598 GO:0046983
Rops1g00962 276 SMART finulus 161 211 IPR011598 GO:0046983
Rops1g00962 276 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00962 Rops-Chr1 23143917 23147549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00962 1 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.408 1.88e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00962 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00962 - - gmx:100794893 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00962 1 23143917 23147549 Rops1g00962 1 23143917 23147549 ECH
Rops1g00962 1 23143917 23147549 Rops1g00962 1 23143917 23147549 PCT