Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00960 ATGAATCAGCACGTTCCTTCGACTCGAACGGTTCTACTCGGCCGAGTCCAGCCTCAGGCACCTGGTCACCGCACCATCTTCTGCAACGATCGCCAAGCCAATCTTCACCTCCGATTCAAGGGGAATTCAATATCGACTACAAAGTACAACATTTTCACTTTTTTGCCAAAAGGATTGTTTGAACAGTTCAGGCGGGTTGCTAATCTCTACTTTCTTACGATCTCAATTTTTTCTACCACGCCTATTAGCCCTGTGTCTCCAATAACTAATGTGCTTCCTCTATCTCTGGTGCTTCTTCTTTCTCTTATTAAGGAAGCTTTTGAAGACTGGAAGCGTTTTCAAAATGACATGGCCATAAACAACAATGTTATAGATGTTTTGCAAGATCAAGAGTGGGTTTCTATATCCTGGAAAAAGTTGCAAGTTGGTGACATTGTCAAGGTTAAGCAGGATGGATTCTTTCCTGCTGATCTGCTTTTCCTGACTGGTACAAATGTAGATGGTGTCTGCTACATTGAGACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTACCTGACTCCAGAGAAGGCATCCGAGTTTAAAGGTGAAATTCAGTGTGAACAACCAAACAATTCATTGTATACCTTCACTGGAAATCTTATAATTCAAAACCAAACTCTTCCTGTCAGTCCAAATCAACTTCTGTTGCGAGGATGCAGTCTCAGGAATACAGAATATATTGTTGGGGTTGTTATTTTTACAGGACATGAAACAAAGGTGATGATGAATGCTATGAATGTTCCTTCCAAAAGGAGTACATTGGAGAGGAAGCTTGACAAGCTCATACTCACTCTATTTGCAACTCTCTTTGTGATGTGTTTTATAGGAGCTGTGGGCAGTGCTATCTTTGTAAACAAAAAGTATTTCTATTTACATCTTGAATCATCTGAGGAGGGCTCAGCACAGTTTGACCCAAGAAACAGATTTTTGGTTTTCCTTCTGACTATGTTTACCCTCATCACTTTATACTCAACAATCATCCCCATTTCACTTTATGTATCGATAGAGATGATCAAATTTATTCAGTCCACTCAATTTATCAACAAGGACTTGCACATGTACCATTATGAAACCAATACCCCAGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGGCAGGTGGAATACATCTTCTCGGACAAAACTGGGACTCTGACAAGAAACTTAATGGAGTTCTTCAAGTGTTCAATTGGAGGAGAGGTCTATGGAAATGGAGTGACTGAAATTGAGAAGGGAATAGCAGAGCGTAGTGGCATAAATCTTGAGGAAAATGCCTCACTCAACACAGTGCGAGAGAGGGGTTTTAATTTTGATGATGCCAGGCTCATGCAAGGAGCTTGGAGAAATGAGCCAAATCCTGATAGCTGCAAGGAATTCTTTAGATGCCTTGCTATTTGCCATACTGTGCTTCCTGAGGGTGATGAGTCCCCTGAGAAGATCACATACCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCAGCGAAGAACTTTGGTTTTTTCTTTTACAGACGCACGCCTACAATGATATATATTCGTGAATCTCACGTTGAGAAGATGGGTAAAATTCAAGATGTGTCGTATGAGATTTTGAATGTGCTCGAGTTTAACAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGTTATCCAGATGGGAGGCTTGTATTGTACTGTAAGGGTGCTGATACTGTAATCTATGAGAGATTAGCTGATGGGTATAATGATATTAAAAAAGTAACCAGGGAGCATTTGGAACAATTTGGAGCTGCTGGACTACGCACATTATGCCTGGCCTACAAAGACCTACATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTCATCCAGGCCAAATCTTCTCTACATGATCGGGAAAAAAAGTTAGATGAGGTGGCAGAACTTATAGAGAATGAGCTCATTTTGATTGGTAGCACTGCCATAGAAGACAAGCTTCAAGATGGAGTACCAGCTTGTATAGATACTCTTCAAACAGCTGGCATTAAGATCTGGGTGCTTACAGGGGACAAGATTGAAACAGCAATTAATATTGCCTATGCATGCAATTTAATAAACAATGAGATGAAGCAATTTATTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACATGGGGGACCAAGTAGAAATCGCACGATTTATTAAAGAAGAAGTGATGAAAGAGCTGAAGAAGTGCCTTGAGGAAGCACAGAGCTATTTTAGCTCTCTATCTGGACCAAAATTAGCACTTGTAATTGATGGCAAATGTCTAATGTATGCATTGGATCCAAGTTTGAGGGTCATGCTGCTGAATTTGAGTTTGAATTGTCATGCTGTTGTTTGTTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTCACAAGTTTGGTCAAGAAAGGCGCACGGAAAATAACACTTAGTATTGGTGACGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGGATGCAAGCTGTGATGGCTAGTGATTTTGCCATTGCACAGTTTCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATCTTCGAATATGCAAGGTGGTGACGTACTTCTTTTACAAGAATCTCACATTCACTCTTACTCAGTTTTGGTTTACCTTCCAAACTGGGTTTTCTGGCCAGAGATTCTATGATGATTGGTTTCAGTCGTTGTATAATGTTATCTTCACTGCGCTGCCTGTGATTATTGTTGGACTATTTGACAAGGATGTCAGTGCATCTCTATCCAAGAAGTATCCAGAACTATACAGGGAGGGAATAAGAAATGTCTTTTTCAAATGGAGAGTTGTGGCTATATGGGCCTTTTTTTCTGTCTACCAGTCTCTAATATTCTTCTATTTTGTGACTTCGTCAAGTTTAAGCGCTAAAAATTCAGTAGGCAAGACATTTGGACTCTGGGATGTCAGTTCAATGGCCTTCACATGTGTTGTAGTAACTGTCAACTTACGACTTCTTATGATTTGCAATTCAATCACAAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCTTGGTTTATTTTTGTTTTTATATATTCGGGGATCAGCACTCCTTATGATCGACAGGAGAATATGTATTTTGTCATATATGTCTTGATGAGCACGTTATATTTCTACCTCACGCTATTTCTTGTCCCCGTTGCGGCACTTTTTTGTGACTTTGTTTACCAAGGGGTTCAGAGATGGTTCTTCCCCTATGATTATCAGATTATTCAAGAAATGCATAGACATGAGAATGATGACACCAGCAGGGCACAACTGCTAGAGATAGGGAACCAGCTTACTCCAGCTGAGGCAAGGAGCTATGCCATATCTCAACTCCCACGTGAGATATCAAAGCACACCGGGTTTGCCTTCGATTCACCTGGTTATGAGTCATTTTTTGCTGCACAGCTTGGTATATATGCCCCACAAAAGGCTTGGGATGTTGCAAGACGAGCTTGCATGAAATCCCGGCCAAAGATTGGACAGAAAAAGTAA 3624 0.4081 MNQHVPSTRTVLLGRVQPQAPGHRTIFCNDRQANLHLRFKGNSISTTKYNIFTFLPKGLFEQFRRVANLYFLTISIFSTTPISPVSPITNVLPLSLVLLLSLIKEAFEDWKRFQNDMAINNNVIDVLQDQEWVSISWKKLQVGDIVKVKQDGFFPADLLFLTGTNVDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLIIQNQTLPVSPNQLLLRGCSLRNTEYIVGVVIFTGHETKVMMNAMNVPSKRSTLERKLDKLILTLFATLFVMCFIGAVGSAIFVNKKYFYLHLESSEEGSAQFDPRNRFLVFLLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLHMYHYETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIEKGIAERSGINLEENASLNTVRERGFNFDDARLMQGAWRNEPNPDSCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVIAAKNFGFFFYRRTPTMIYIRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADGYNDIKKVTREHLEQFGAAGLRTLCLAYKDLHPDVYESWNEKFIQAKSSLHDREKKLDEVAELIENELILIGSTAIEDKLQDGVPACIDTLQTAGIKIWVLTGDKIETAINIAYACNLINNEMKQFIISSETDAIREVEDMGDQVEIARFIKEEVMKELKKCLEEAQSYFSSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSLVKKGARKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIRNVFFKWRVVAIWAFFSVYQSLIFFYFVTSSSLSAKNSVGKTFGLWDVSSMAFTCVVVTVNLRLLMICNSITRWHYISVGGSILAWFIFVFIYSGISTPYDRQENMYFVIYVLMSTLYFYLTLFLVPVAALFCDFVYQGVQRWFFPYDYQIIQEMHRHENDDTSRAQLLEIGNQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRACMKSRPKIGQKK* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00960 1207 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 25 1162 - -
Rops1g00960 1207 FunFam Phospholipid-transporting ATPase 668 875 - -
Rops1g00960 1207 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Rops1g00960 1207 PRINTS P-type cation-transporting ATPase superfamily signature 404 418 - -
Rops1g00960 1207 Gene3D - 665 875 IPR023214 -
Rops1g00960 1207 ProSitePatterns E1-E2 ATPases phosphorylation site. 406 412 IPR018303 -
Rops1g00960 1207 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 411 671 IPR023299 GO:0000166
Rops1g00960 1207 NCBIfam phospholipid-translocating P-type ATPase 39 1121 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Rops1g00960 1207 CDD P-type_ATPase_APLT_Dnf-like 41 995 - -
Rops1g00960 1207 FunFam Phospholipid-transporting ATPase 100 269 - -
Rops1g00960 1207 Pfam Phospholipid-translocating ATPase N-terminal 26 90 IPR032631 -
Rops1g00960 1207 Gene3D - 531 657 IPR023299 GO:0000166
Rops1g00960 1207 FunFam Phospholipid-transporting ATPase 512 667 - -
Rops1g00960 1207 NCBIfam HAD-IC family P-type ATPase 808 914 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g00960 1207 SUPERFAMILY HAD-like 399 891 IPR036412 -
Rops1g00960 1207 Pfam Phospholipid-translocating P-type ATPase C-terminal 863 1113 IPR032630 -
Rops1g00960 1207 SFLD p-type atpase 386 886 IPR044492 -
Rops1g00960 1207 SUPERFAMILY Calcium ATPase, transmembrane domain M 32 1113 IPR023298 -
Rops1g00960 1207 SFLD Haloacid Dehalogenase 386 886 - -
Rops1g00960 1207 Pfam E1-E2 ATPase 122 360 - -
Rops1g00960 1207 Pfam Cation transport ATPase (P-type) 502 595 - -
Rops1g00960 1207 Gene3D - 104 269 - -
Rops1g00960 1207 SUPERFAMILY Calcium ATPase, transduction domain A 122 265 IPR008250 -
Rops1g00960 1207 FunFam Phospholipid-transporting ATPase IC 401 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00960 Rops-Chr1 23099267 23115819 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00960 2 1206 Primary Pumps ATPases AT1G59820 79.436 0.0 2060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00960 K14802 - gmx:100815547 2212.57