Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00959 ATGATGCCGGAAAGTGACGTCACGCCATCATCACCGGCGGCATCTTTTAGGCTCCGTTGGGACGTGTTTCTTAGTTTCAGGGGCACAGACACACGCGAAACCTTCACTAAGGACCTCTATGATGCACTCAATACCCGTGGGGTTCGGGTTTTTCGCGATGATGATGGGTTGGGTCGTGGAGATGAGATAAAGGAGAGTCTTTTGGAGGCCATTGAAGATTCTGCAGCTTCTGTTATCGTTCTCTCTCCTGACTATGCATCTTCACGTTGGTGCCTTGAGGAGTTGGCCAAGATTTGTGACTGTGGGAGGCTTATTCTGCCCGTTTTCTACCGGGTCGACCCGTCTGATGTCAGAAAACAAATGGGTCCTTTTGAGAAAGCTTTCATGTCCCATGCACACAGGTTTGGGTCACAGAAGGTTCAGAAATGGAGGGATGCCATGACAAAAGTTGGTGGAATTGCTGGTTGGGTTTTTGAAGAGAACGGTGACAGTGATAAGCTCATTCGAGTTTTGGTGGACACTGTTATGAAGCAGATGAGGAATACTCCACTGAGTGTGGCTCAGTACACAGTTGGGCTTGATGATAGAGGTGAAGAGTTGAGAAAACTGTTTGATGTGAAATCCAATGATGTGAGGGTTTTGGGGTTATATGGAATGGGTGGGGTTGGTAAAACAACCCTTGCCAAGAGCCTCTTCAACAACCTTGTTGTTCATTTTGATCGCCGCAGCTTCATTTCAAATGTTAGAGAAGTTTCAAAGCATGATGATAGTGGTTTAATTTCTCTTCAAAACAGAATATTGGGCGATCTTTCCTCTAGTGGAAAATTGGATATTGTGAATGATGTTAATGATGGTATTTCTGCTATCAAAAGAATATTACATGAAAATAGAGTCATGCTAATCTTAGATGATGTCGATGATGTAAAGCAGCTTGATTTTTTGATGGGTAAGAGGGAATGGTTTTATAAAGGAAGCAGAGTTGTAATAACCACAAGGGACAAACAAGTTCTACTTGAGGGTCATGTTGATATGCACTATGAGGTGCAGGAATTGGAATTCTCTCAAGCACTGGAATTATTCTGTTACCATGCAATGAGAAGAAAGGAACCTGCAAATGGCTTTGAGAATCTGTCAAATCAAATTGTGGAAAAGACAGGAAGATTGCCTTTGGCTTTGGAAGTTTTTGGCTCTTTTCTGTTTGATAAGAGGACGATTATGGAGTGGAAAGATGCTATAGAGAGGCTGAACAAGATTCGTCCTGCATATATTCAAGATGTGTTGAAGATAAGTTTTGATGCTTTAGATGAACAAGAGCAATGTATATTCCTTGACATTGCTTGTTTGTTTGTGCAAATGGAAATGAAGAGAGAAGAAGTGATTGATATATTGAATGGTTGTAAGTTTAATGGGGAGATAGCAATAACAGTCCTCACTGCAAAATGTCTAATTAAAATAGTTAAGGATGATACCCTTTGGATGCATGATCAAGTTAGAGACATGGGAAGGCAAATTGTTCAAAATGAAAGCCCTACAGATTGTGGTCTACGTAGCAGGCTCTGGGATCGTGATGAAATCTTCACTGTCTTGAAGAGTAAGAAGGGAACAAGAAATGTCCAAGGGATTGTCCTAGACTGTGTAAAGAGAAACAAGTTAAATCCTAGAGATCGGTCTGCTGATGAAATTACCTGGGATAACTTTCGTCAAAAGCCCAGTTGTAAATCTGCATCAGCATGCATAAAAGAGAAGTATAAAAAGTATAAGCGGGACAGAGAAGAGAAAGCAAAAGAGGTTATACTTCAGACAAAGCACTTTCAACCAATGGTTTCCTTAAGATTGCTTCAAATTAATTATTCGAGATTGGAAGGACAATTTAGATGTCTTCCTCCAGGACTGAAGTGGTTACAATGGAAACGATGTCCATTAAGGCATATGCCTTCAACCTATAATCCTTTGGAGCTTGCTGTGATTGATCTTTCTGAAAGTAAGATTGAAACGGTGTGGGGCAGGCGCAGTAACAAGGTGGCTAAGCACTTGATGGTTTTAAACCTCTCCAGTTGCCACAGGTTGGCAGCAATTCCTGATTTAAGTGGCTATCTATCTCTGAAAAAAATTGTTTTGGAAGAATGCTCTCATTTAACTCGGATTCATGAATCACTTGGAAATCTAAGTACCTTAGTTCACTTGAACTTGGGCAACTGCAATAACCTTAATGAATTACCTGGTGATGTCTCTGGGCTAAAACATCTCGAGGACCTTATTCTTTCTGGTTGCTGGAAATTGAAAGCATTACCAACAGACATAAGCTGCATGGTTTCTTTAAGACAACTTCTTGTTGATAAAACTGCTATAACTGAGTTACCTGAGTCCATCTTCCACCTGACTAAACTTGAAAAGCTGAGTGCAAATGGATGCCATTTGTTGAATAGGTTACCTACCTGCATTGGCAAACTGAGCTCACTGCAAGAATTGTCACTCAACCATACAGCATTGGAGGAATTGCCCGATTCTGTTGGTTCTTTGGAAAACCTTGAGATGCTTGGTTTGGTGGGGTGTAGGTCACTTTCTTTGATTCCTAACTCTGTTGGGAATCTAATTTTAATGAAACATTTATATTTTTCTGTCAGCGGAATCAAAGAATTGCCTGCTTCTATTGGTTCTTTATCCTACTTAAGGACACTGTCTGTTCGAGGCTGTACTTCTCTTGACAAATTGCCTGTATCGATAGAAGCTTTAGTTTCTGTCGTTGAGCTTCATTTAGATGGGACATCAATTACCAATTTGCCAGATCAAATTGGGGCTATGAAAATGCTAAAAAAGCTAGAGATGAAAGGTTGTCAGCATCTCAGGTTTCTACCAGAATCAATTGGTCGCTTGTCTGCTCTTACCACTTTGGACATGTATAAGACTAACATTACTGAATTACCAGAGTCAATAGGAATGTTGGAAAACCTTATCCGGTTGAGATTAGACATGTGCAAACAGCTCCAAAAGCTTCCAGCTTCCATGGGAAACTTGAAGTCTTTGCAATGGTTACTGATGCAGGAAACAGCACTTACACATCTACCTGATAGCTTTGGGATGCTTTCAAGCCTTGTAGAACTTCGCATGGAAAGAAGGCCTTATCTTAATATGCTTGAAAATAATACGGACATAATTTCTGAAAAGCAAGAAGAACCTAATTCAGAGGCAATCTTATCTTCTTTTTGTAATCTAACCTTGCTGGAACAGCTAAATGCTCATGGATGGAGAATTGTAGGAAAAATTCCAGATGATTTTGAAAAGCTGTCATCACTAGAAACTTTAAGTTTAGGCCACAACAATATTTGCAGTCTTCCAGCCAGCATGACAGGCCTCTCCTATCTAAAAAAACTTTCATTGCCAGATTGCAGTGAGCTCATGTTTCTGCCTCCTCTTCCCTCTAGCTTAGAGGATTTGAATATTGCAAACTGTATTGCACTACAGTACATATCTGATATTTCAAACTTGGACAAGTTAGAGGAGTTCAACTTGACAAATTGTGAAAAGTTGAAGGATATACCGGGTCTTGAACATTTGAAGTCCTTAAGAAGGTTGTACATGAGTGGTTGTATTGGATGCTTCCTTGCCGTAAAGAGAAGATTTTCCAAGGTTCTACTTAAAAAATTAGAGATTCTGATTATGCCTGGAAACAGAGTTCCTGATTGGTTTTCAGGAGAATCCATTGTCTTTTCCAAGCGAAGAAACCGAGAGCTTAAAGGTATTATTTGTGTTGGTGTGCTCTCTTTCAACAATATACCTGAAAACCAAAGAGAGAAACTGCAGTTAGTGGATGTTCAAGGGAAAGTATTCAATTTGACTGATCAAGTTTATAGCACAACGTTTCGCCTGCTAGGAGTACCTAGGACAAACAAAGACCACATTTTTTTGCGCAGATTTGGAGTTCGTACTTCCTTAGTTTTTGCGCTAAAAGATAGGTATACCTTACATTTGACAATGCGGGACAAACCCTATGTTGAGGGGCTGGAGCTGAAGAACTGTGGAATCTATTTAGTCTTTGAAGGTGATGATGATTATGAGGGAGATGAAGAATCACTAGACGAAAGTCAATACTCTGTTTCACAAAAATTGGCTAAGTTCTTCAACTCCAATGCAGATGATCCATGTGTGTGA 4149 0.4011 MMPESDVTPSSPAASFRLRWDVFLSFRGTDTRETFTKDLYDALNTRGVRVFRDDDGLGRGDEIKESLLEAIEDSAASVIVLSPDYASSRWCLEELAKICDCGRLILPVFYRVDPSDVRKQMGPFEKAFMSHAHRFGSQKVQKWRDAMTKVGGIAGWVFEENGDSDKLIRVLVDTVMKQMRNTPLSVAQYTVGLDDRGEELRKLFDVKSNDVRVLGLYGMGGVGKTTLAKSLFNNLVVHFDRRSFISNVREVSKHDDSGLISLQNRILGDLSSSGKLDIVNDVNDGISAIKRILHENRVMLILDDVDDVKQLDFLMGKREWFYKGSRVVITTRDKQVLLEGHVDMHYEVQELEFSQALELFCYHAMRRKEPANGFENLSNQIVEKTGRLPLALEVFGSFLFDKRTIMEWKDAIERLNKIRPAYIQDVLKISFDALDEQEQCIFLDIACLFVQMEMKREEVIDILNGCKFNGEIAITVLTAKCLIKIVKDDTLWMHDQVRDMGRQIVQNESPTDCGLRSRLWDRDEIFTVLKSKKGTRNVQGIVLDCVKRNKLNPRDRSADEITWDNFRQKPSCKSASACIKEKYKKYKRDREEKAKEVILQTKHFQPMVSLRLLQINYSRLEGQFRCLPPGLKWLQWKRCPLRHMPSTYNPLELAVIDLSESKIETVWGRRSNKVAKHLMVLNLSSCHRLAAIPDLSGYLSLKKIVLEECSHLTRIHESLGNLSTLVHLNLGNCNNLNELPGDVSGLKHLEDLILSGCWKLKALPTDISCMVSLRQLLVDKTAITELPESIFHLTKLEKLSANGCHLLNRLPTCIGKLSSLQELSLNHTALEELPDSVGSLENLEMLGLVGCRSLSLIPNSVGNLILMKHLYFSVSGIKELPASIGSLSYLRTLSVRGCTSLDKLPVSIEALVSVVELHLDGTSITNLPDQIGAMKMLKKLEMKGCQHLRFLPESIGRLSALTTLDMYKTNITELPESIGMLENLIRLRLDMCKQLQKLPASMGNLKSLQWLLMQETALTHLPDSFGMLSSLVELRMERRPYLNMLENNTDIISEKQEEPNSEAILSSFCNLTLLEQLNAHGWRIVGKIPDDFEKLSSLETLSLGHNNICSLPASMTGLSYLKKLSLPDCSELMFLPPLPSSLEDLNIANCIALQYISDISNLDKLEEFNLTNCEKLKDIPGLEHLKSLRRLYMSGCIGCFLAVKRRFSKVLLKKLEILIMPGNRVPDWFSGESIVFSKRRNRELKGIICVGVLSFNNIPENQREKLQLVDVQGKVFNLTDQVYSTTFRLLGVPRTNKDHIFLRRFGVRTSLVFALKDRYTLHLTMRDKPYVEGLELKNCGIYLVFEGDDDYEGDEESLDESQYSVSQKLAKFFNSNADDPCV* 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00959 1382 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 181 - -
Rops1g00959 1382 Gene3D Ribonuclease Inhibitor 1059 1274 IPR032675 -
Rops1g00959 1382 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 906 IPR044974 GO:0006952
Rops1g00959 1382 SMART LRR_typ_2 722 746 IPR003591 -
Rops1g00959 1382 SMART LRR_typ_2 1095 1118 IPR003591 -
Rops1g00959 1382 SMART LRR_typ_2 911 934 IPR003591 -
Rops1g00959 1382 SMART LRR_typ_2 958 981 IPR003591 -
Rops1g00959 1382 SMART LRR_typ_2 770 793 IPR003591 -
Rops1g00959 1382 SMART LRR_typ_2 1005 1027 IPR003591 -
Rops1g00959 1382 SMART LRR_typ_2 817 840 IPR003591 -
Rops1g00959 1382 Gene3D - 351 435 IPR042197 -
Rops1g00959 1382 SMART till_3 19 153 IPR000157 GO:0007165
Rops1g00959 1382 Gene3D - 18 178 IPR035897 -
Rops1g00959 1382 ProSiteProfiles TIR domain profile. 18 179 IPR000157 GO:0007165
Rops1g00959 1382 SUPERFAMILY L domain-like 901 1230 - -
Rops1g00959 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 445 IPR027417 -
Rops1g00959 1382 PRINTS Disease resistance protein signature 385 399 - -
Rops1g00959 1382 PRINTS Disease resistance protein signature 213 228 - -
Rops1g00959 1382 PRINTS Disease resistance protein signature 292 306 - -
Rops1g00959 1382 PRINTS Disease resistance protein signature 720 736 - -
Rops1g00959 1382 Pfam NB-ARC domain 202 420 IPR002182 GO:0043531
Rops1g00959 1382 ProSiteProfiles Leucine-rich repeat profile. 1097 1118 IPR001611 GO:0005515
Rops1g00959 1382 SUPERFAMILY L domain-like 492 945 - -
Rops1g00959 1382 Gene3D Ribonuclease Inhibitor 592 870 IPR032675 -
Rops1g00959 1382 Gene3D - 179 344 IPR027417 -
Rops1g00959 1382 Gene3D Ribonuclease Inhibitor 871 1057 IPR032675 -
Rops1g00959 1382 Pfam TIR domain 20 182 IPR000157 GO:0007165
Rops1g00959 1382 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 156 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00959 Rops-Chr1 23092111 23098826 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00959 12 893 WRKY Transcription Factor Family AT4G12020 27.716 2.84e-76 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00959 - - gmx:100784137 2118.2