Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00956 ATGATACTGGAAAGTGACGTCATGTCATCATCGCCGGCAGCAGCATCTTTCAGGCTCCGTTGGGACGTGTTCCTTAGTTTCAGGGGCACAGACACACGCGAAACCTTCACTAAGGACCTCTATGATGCACTCAATACCCGTGGGGTTCGGGTTTTCCGAGATGATGATGGGTTGGGTCGTGGAGATGAGATAAAGGAGAGTCTTTTGGAGGCAATTGAAGATTCTGCAGCTTCTGTTATTGTTCTCTCTCCTGACTATGCCTCTTCACGTTGGTGCCTTGAGGAGTTAGCAAAGATTTGTGACTGTGGGAGGCTCATCTTGCCCGTTTTCTACTGGGTCGACCCGTCAGATGTCAGAAAACAAATGGGTCCTTTTGAAGAGGCTTTCAAGTTCCATGTAGACAGGTTTGGGTCACACAAGGTTCAGAAATGGAGGGATGCCATGGCAAAAGTTGGTGGGATTGCTGGTTGGGTTTTTGAAGAGAACAGTGACAGTGATAAGCTCATTCGAGTTTTGGTGGACACTGTTATGAAGCAGATGAGGAATACTCCACTGAGTGTGGCTCAGTACACAGTTGGGCTTGATGATAGAGGTGAAGAGTTGAGAAAACTGTTTGATGTGAAATCCAATGATGTGAGGGTTTTGGGTTTATATGGAATGGGTGGGGTTGGTAAAACAACCCTTGCCAAGAGCCTCTTCAACAACCTTGTTGTTCATTTTGATCGCCGCAGCTTCATTTCAAATGTTAGAGAAGTTTCAAAGCATAATGATAGTGGTTTGATTTCTCTTCAAAACAGAATATTGGGTGATCTTTCCTCTAGTGGAAAATTGGATATTGTGAATGATGTTAATGATGGTATTTCTGCTATCAAAAGAATATTACATGAAAATAGAGTTATGCTGATCCTAGATGATGTCGATGATGTAAAGCAGCTTGATTTTTTGATGGGTAAGAGGGAATGGTTTTATAAAGGAAGCAGAGTTGTAATAACCACAAGGGACAAACAAGTTTTACTTGAGGGTCATGTTGATATGCACTATGAGGTGCAGGAATTGGAATTCTCTCAAGCACTGGAATTATTCTGTTACCATGCAATGAGAAGAAAGGAACCTGCAAATGGCTTTGAGAATCTGTCAAATCAAATTGTGGAAAAGACAGGAAGATTGCCTTTGGCTTTGGAAGTTTTTGGCTCTTTTCTGTTTGATAAGAGGACGATTATGGAGTGGAAAGATGCTATAGAGAGGCTGAACAAGATTCGTCCTGCATATATTCAAGATGTGTTGAAGATAAGTTTTGATGCTTTAGATGAACAAGAGCAATGTATATTCCTTGACATTGCTTGTTTGTTTGTGCAAATGGAAATGAAGAGAGAAGAAGTGATTGATATATTGAATGGTTGTAAGTTTAATGGGGAGATAGCAATAACAGTCCTCACTGCAAAATGTCTAATTAAAATAGTTAAGGATGATACCCTTTGGATGCATGATCAAGTTAGAGACATGGGAAGGCAAATTGTTCAAAATGAAAGCCCTACAGATTGTGGTCTACGTAGCAGGCTCTGGGATCGTGATGAAATCTTCACTGTCTTGAAGAGTAAGAAGGGAACAAGAAATGTCCAAGGGATTGTCCTAGACTGTGTAAAGAGAAACAAGTTAAATCCTAGAGATCGGTCTGCTGATGAAATTACCTGGGATAACTTTCGTCAAAAGCCCAGTTGTAAATCTGCATCAGCATGCATAAAAGAGAAGTATAAAAAGTATAAGCGGGACAGAGAAGAGAAAGCAAAAGAGGTTATACTTCAGACAAAGCACTTTCAACCAATGGTTTCCTTAAGATTGCTTCAAATTAATTATTCGAGATTGGAAGGACAATTTAGATGTCTTCCTCCAGGACTGAAGTGGTTACAATGGAAACGATGTCCATTAAGGCATATGCCTTCAACCTATAATCCTTTGGAGCTTGCTGTGATTGATCTTTCTGAAAGTAAGATTGAAACGGTGTGGGGCAGGCGCAGTAACAAGGTGGCTAAGCACTTGATGGTTTTAAACCTCTCCAGTTGCCACAGGTTGGCAGCAATTCCTGATTTAAGTGGCTATCTATCTCTGAAAAAAATTGTTTTGGAAGAATGCTCTCATTTAACTCGGATTCATGAATCACTTGGAAATCTAAGTACCTTAGTTCACTTGAACTTGGGCAACTGCAATAACCTTAATGAATTACCTGGTGATGTCTCTGGGCTAAAACATCTCGAGGACCTTATTCTTTCTGGTTGCTGGAAATTGAAAGCATTACCAACAGACATAAGCTGCATGGTTTCTTTAAGACAACTTCTTGTTGATGAAACTGCTATAACTGAGTTACCTGAGTCCATCTTCCACCTGACTAAACTTGAAAAGTTGAGTGCAAATGGATGCCATTTGTTGAATAGGTTACCTACCTGCATTGGCAAACTGAGCTCACTGCAAGAATTGTCACTCAACCATACAGCATTGGAGGAATTGCCCGATTCTGTTGGTTCTTTGGAAAACCTTGAGATGCTTGGTTTGGTGGGGTGTAGGTCACTCTCTGTGATTCCTAACTCTCTTGGGAATCTAATTTTAATGAAACATTTATATTTTTCGGTCAGTGGAATCAAAGAATTGCCTGCTTCTATTGGTTCTTTATCCTACTTAAGGACACTGTCTGTTGGAGGCTGTACTTCTCTTGACAAATTGCCTGTATCGATAGAAGCTTTAGTTTCTGTTGTTGAGCTTCATTTAGATGGGACATCAATTACCAATTTGCCAGATCAAATTGGGGCTATGAAAATGCTAAAAAAGCTAGAGATGAAAGGTTGTCAGCATCTCAGGTTTCTACCAGAATCAATTGGTCGCTTGTCTGCTCTTACCACTTTGGACATGTATAAGACTAACATTACTGAATTACCAGAGTCAATAGGAATGTTGGAAAACCTTATCCGGTTGAGATTAGACATGTGCAAACAGCTCCAAAAGCTTCCAGCCTCCATGGGAAACTTGAAGTCTTTGCGATGGTTACTGATGCTGGAAACAGCACTTACACATCTACCTGATAGCTTTGGGATGCTTTCAAGCCTTGTAGAGCTTCGCATGGAAAGAAGGCCTTATCTTAATATGTTTGAAAATAATACGGATATAATTTCTGAAAAGCAAGAAGAACCTAATTCAGAGGCAATCTTAACTTCTTTTTGTACTCTAACCTTGCTGGAACAGCTATATGCTCATGGATGGAGATTAGTAGGAAAAATTCCAGATGATTTTGAAAAGCTATCATCACTAGAAACTTTAAGTTTAGGCCACAACAATATTTGCAGTCTTCCAGCCAGCATGACAGGCCTTTCCCATCTAAAAAATCTTTCATTGCCAGATTGCAGGGAGCTCATGTTTCTGCCTCCTCTTCCCTCAAGCTTAGAGGATCTGAACATTGCAAACTGTACTGCACTACAGTACATATCTGATATTTCAAACTTGGACAAGTTAGAGGAGTTCAACCTTACAAATTGTGAGAAGTTGGAGGATATACCGGGTCTCGAACATCTGAAGTCCTTAAGAAGGTTGTACATGAGTGGTTGTATTGGATCCTTCCTTGCCGTAAAGAGGAGATTTTCCAAGGTTCTACTTAAAAAATTAGAGATTCTGATTATGCCTGGAAGCAGAGTTCCGGATTGGTTTTCAGGAGAATCAGTTGTCTTTTCCAAGCGAAGAAACCAAGAGCTTAAAGGTATTATTTGTGTTGGTGTGCTCTCTTTCAACAATATACCTGAAAACCAAAGAGATAAACTGCAGTTAGAGGATGTTCAAGGAAAAGTATTCAATTTGACTGATCAAGTTTATAGCACAACGTTTCGCCTGCTTGGAGTACCTAGGACAAATGAAGACCACATTTTTTTGCACAGATTTGGAGTTCATACTTCCTTAGTTTTTCAGTTAAAAGATAGGTATACCTTACATTTGACAAAGCGAGACCCACCCAATGTTGAGGGGCTGGAGCTGATGAACCGTGGAATTTATTTAGTCTTTGAAGGTGATGATGATTATGAGGGAGATGAAGAATCACTAGACGAAAGTCAATACTCTGTTTCACAAAAATTGGCTAGGTTCTTCAACTCCAATGCAGATGATCCATGTGTGTGA 4152 0.4015 MILESDVMSSSPAAASFRLRWDVFLSFRGTDTRETFTKDLYDALNTRGVRVFRDDDGLGRGDEIKESLLEAIEDSAASVIVLSPDYASSRWCLEELAKICDCGRLILPVFYWVDPSDVRKQMGPFEEAFKFHVDRFGSHKVQKWRDAMAKVGGIAGWVFEENSDSDKLIRVLVDTVMKQMRNTPLSVAQYTVGLDDRGEELRKLFDVKSNDVRVLGLYGMGGVGKTTLAKSLFNNLVVHFDRRSFISNVREVSKHNDSGLISLQNRILGDLSSSGKLDIVNDVNDGISAIKRILHENRVMLILDDVDDVKQLDFLMGKREWFYKGSRVVITTRDKQVLLEGHVDMHYEVQELEFSQALELFCYHAMRRKEPANGFENLSNQIVEKTGRLPLALEVFGSFLFDKRTIMEWKDAIERLNKIRPAYIQDVLKISFDALDEQEQCIFLDIACLFVQMEMKREEVIDILNGCKFNGEIAITVLTAKCLIKIVKDDTLWMHDQVRDMGRQIVQNESPTDCGLRSRLWDRDEIFTVLKSKKGTRNVQGIVLDCVKRNKLNPRDRSADEITWDNFRQKPSCKSASACIKEKYKKYKRDREEKAKEVILQTKHFQPMVSLRLLQINYSRLEGQFRCLPPGLKWLQWKRCPLRHMPSTYNPLELAVIDLSESKIETVWGRRSNKVAKHLMVLNLSSCHRLAAIPDLSGYLSLKKIVLEECSHLTRIHESLGNLSTLVHLNLGNCNNLNELPGDVSGLKHLEDLILSGCWKLKALPTDISCMVSLRQLLVDETAITELPESIFHLTKLEKLSANGCHLLNRLPTCIGKLSSLQELSLNHTALEELPDSVGSLENLEMLGLVGCRSLSVIPNSLGNLILMKHLYFSVSGIKELPASIGSLSYLRTLSVGGCTSLDKLPVSIEALVSVVELHLDGTSITNLPDQIGAMKMLKKLEMKGCQHLRFLPESIGRLSALTTLDMYKTNITELPESIGMLENLIRLRLDMCKQLQKLPASMGNLKSLRWLLMLETALTHLPDSFGMLSSLVELRMERRPYLNMFENNTDIISEKQEEPNSEAILTSFCTLTLLEQLYAHGWRLVGKIPDDFEKLSSLETLSLGHNNICSLPASMTGLSHLKNLSLPDCRELMFLPPLPSSLEDLNIANCTALQYISDISNLDKLEEFNLTNCEKLEDIPGLEHLKSLRRLYMSGCIGSFLAVKRRFSKVLLKKLEILIMPGSRVPDWFSGESVVFSKRRNQELKGIICVGVLSFNNIPENQRDKLQLEDVQGKVFNLTDQVYSTTFRLLGVPRTNEDHIFLHRFGVHTSLVFQLKDRYTLHLTKRDPPNVEGLELMNRGIYLVFEGDDDYEGDEESLDESQYSVSQKLARFFNSNADDPCV* 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00956 1383 Gene3D - 180 345 IPR027417 -
Rops1g00956 1383 Gene3D - 19 179 IPR035897 -
Rops1g00956 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 446 IPR027417 -
Rops1g00956 1383 ProSiteProfiles TIR domain profile. 19 180 IPR000157 GO:0007165
Rops1g00956 1383 Gene3D Ribonuclease Inhibitor 855 1016 IPR032675 -
Rops1g00956 1383 Gene3D Ribonuclease Inhibitor 1017 1205 IPR032675 -
Rops1g00956 1383 Gene3D Ribonuclease Inhibitor 578 762 IPR032675 -
Rops1g00956 1383 Gene3D - 352 436 IPR042197 -
Rops1g00956 1383 SUPERFAMILY L domain-like 903 1223 - -
Rops1g00956 1383 PRINTS Disease resistance protein signature 721 737 - -
Rops1g00956 1383 PRINTS Disease resistance protein signature 293 307 - -
Rops1g00956 1383 PRINTS Disease resistance protein signature 386 400 - -
Rops1g00956 1383 PRINTS Disease resistance protein signature 214 229 - -
Rops1g00956 1383 SUPERFAMILY L domain-like 493 927 - -
Rops1g00956 1383 Gene3D Ribonuclease Inhibitor 763 854 IPR032675 -
Rops1g00956 1383 ProSiteProfiles Leucine-rich repeat profile. 1098 1119 IPR001611 GO:0005515
Rops1g00956 1383 SMART LRR_typ_2 912 935 IPR003591 -
Rops1g00956 1383 SMART LRR_typ_2 959 982 IPR003591 -
Rops1g00956 1383 SMART LRR_typ_2 771 794 IPR003591 -
Rops1g00956 1383 SMART LRR_typ_2 723 747 IPR003591 -
Rops1g00956 1383 SMART LRR_typ_2 1006 1028 IPR003591 -
Rops1g00956 1383 SMART LRR_typ_2 818 841 IPR003591 -
Rops1g00956 1383 SMART LRR_typ_2 1096 1119 IPR003591 -
Rops1g00956 1383 Pfam TIR domain 21 183 IPR000157 GO:0007165
Rops1g00956 1383 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 157 IPR035897 -
Rops1g00956 1383 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 846 IPR044974 GO:0006952
Rops1g00956 1383 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 182 - -
Rops1g00956 1383 SMART till_3 20 154 IPR000157 GO:0007165
Rops1g00956 1383 Pfam NB-ARC domain 203 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00956 Rops-Chr1 23047905 23055596 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00956 21 894 WRKY Transcription Factor Family AT4G12020 27.740 3.20e-74 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00956 - - gmx:100784137 2097.78