Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00950 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCCCGAACATGCACCGACGGCGGTGCCGCCGCATCGGGCGGAGAAAACGGCATCATGTTATTCGGCGTGCGAGTCACCGAAGGAAGCTCCTCTTTCAGGAAGAGTGCTAGCATGAACAACCTTTCACAGTACGAGCAGCAACCGCCTCCGAACTCCGCCGACACCGGCTATGTCTCCGACGACATCGTTCACGCCTCCGGTCGCAGCCGAGAGCGCAAACGAGGTGTTCCTTGGACGGAGGAAGAACATAGGTTGTTCCTTTTGGGGTTGCAAAAGGTTGGTAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTGAAAACTCGCACCCCAACTCAGGTGGCAAGTCATGCTCAGAAGTACTTCCTCCGCCGTCACAACCACAATCGCCGTCGCCGGAGATCTAGCCTTTTTGATATCACCACCGATACGGTGATGGAATCTTCTATTATAATGGAAGAGGAGCAAGTTCATCAGCAAGAAACGATGCCACCACCTACCACCGTCGTGTATCCGCCATCACATTACGGCGGCTTCCCCGGCTCGGGTTTTCCGATGTGTATGGCTCCGGTGGTGTTGCCGATGGCGGGTGGTGAAAGACCAACCAAGTCAATTAGGCCAACGCCGATTTTGCCAGTGCCTCCTTCTTCCAAGATGGCTAATTTGAACTTGAAAGAGAAAGCTTCTCTTCCTCCTCCTCTATCTCCCGTTGAGCCTCGACCATTGTCTCTGAATCTTCCACCACCGCCTCCGCCGCCGAAGGATCAATCGCCGGCAAGTAGTGGCCACTCGCCGTCGTCATCATCATCGGCTTTTCAGGCTATGTCTGGTGGGGATAGTATCATCAGTGTTGCTTGA 900 0.5411 MSRTCSQCGNNGHNSRTCTDGGAAASGGENGIMLFGVRVTEGSSSFRKSASMNNLSQYEQQPPPNSADTGYVSDDIVHASGRSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNHNRRRRRSSLFDITTDTVMESSIIMEEEQVHQQETMPPPTTVVYPPSHYGGFPGSGFPMCMAPVVLPMAGGERPTKSIRPTPILPVPPSSKMANLNLKEKASLPPPLSPVEPRPLSLNLPPPPPPPKDQSPASSGHSPSSSSSAFQAMSGGDSIISVA* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00950 299 MobiDBLite consensus disorder prediction 246 272 - -
Rops1g00950 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 138 IPR006447 GO:0003677
Rops1g00950 299 SMART sant 88 138 IPR001005 -
Rops1g00950 299 MobiDBLite consensus disorder prediction 273 291 - -
Rops1g00950 299 Gene3D - 90 141 - -
Rops1g00950 299 MobiDBLite consensus disorder prediction 241 299 - -
Rops1g00950 299 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Rops1g00950 299 ProSiteProfiles Myb-like domain profile. 84 136 IPR001005 -
Rops1g00950 299 MobiDBLite consensus disorder prediction 213 232 - -
Rops1g00950 299 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Rops1g00950 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 140 IPR017930 -
Rops1g00950 299 MobiDBLite consensus disorder prediction 48 68 - -
Rops1g00950 299 MobiDBLite consensus disorder prediction 1 24 - -
Rops1g00950 299 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g00950 299 FunFam transcription factor MYB1R1 90 141 - -
Rops1g00950 299 PANTHER TRANSCRIPTION FACTOR KUA1 1 250 - -
Rops1g00950 299 MobiDBLite consensus disorder prediction 48 72 - -
Rops1g00950 299 CDD SANT 91 136 IPR001005 -
Rops1g00950 299 ProSiteProfiles SANT domain profile. 87 140 IPR017884 -
Rops1g00950 299 SUPERFAMILY Homeodomain-like 86 139 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00950 Rops-Chr1 22993112 22995003 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops1g00950 Myb_DNA-binding 9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00950 - - gmx:780554 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00950 1 22993112 22995003 Rops1g00950 1 22993112 22995003 ECH
Rops1g00950 1 22993112 22995003 Rops1g00950 1 22993112 22995003 PCT