Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00944 ATGAAGAGGTCTAGAGATGATGGTTTCATGAGTTCTTCTTCTCAACTCAAACGGCCTATGGTGTCTTCTCGAGGAGAAGCGTCGGGTCAAGCCCAGATGATGAATGGAGGTGGTCAAAAACTGACTACTAATGATGCCTTGGCATATCTCAAGGCAGTAAAGGATATATTTCAAGACAAGAGGAACAAGTATGATGACTTTTTAGAAGTCATGAAAGATTTCAAGGCCCAAAGACTCGATACTGCAGGTGTCATAGCAAGAGTGAAGGATCTCTTTAAAGGTCACAGAGATCTGATATTGGGATTTAACACTTTCTTGCCAAAGGGATATGAAATCACTCTTCCACTAGAGGATGAACAACCTCCCCCAAAGAAGCCTGTTGAATTCGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGATTTCAAGGCGATGATCATGTCTACAAGTCCTTTCTAGACATATTGAATATGTACAGGAAGGAAAATAAGTCTATCACTGAGGTCTACCAAGAGGTTGCTGTACTTTTTCAAGACCACCCTGATCTTCTTGATGAGTTCACTCATTTTCTTCCAGACACTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCCATGCTTCGTGACAGGAGCTCTGCAATACCAACAGGGCGGCAAATGCATGTTGAAAAGAGAGAAAGGACCATGGTTTCGCATGGTGATCGTGACCCTAGTGTTGACCGTCCTGACCCAGATGAAGACAGAGGTTTGTCAAGAGCCGAAAAGGAGCAGAGGAGACGTGCGGAGAAGGAAAAGGACCGTCGAGAGGATAGAGACAGGAGAGAACGGGAAAGGGATGATAGAGATTATGAGCATGATGGTAGTCGAGATGGGGAGCGATTATCCCATAAACAAAAATCTGATCATAAGGTTGAAGACAATGGAGCTGAACCATTGCTTGATGCAGATGAAAATATTGGTAGGTGTAGTCAAGAGTTTGCTTTCTGTGAGAAAGTCAAAGAGAAATTACGAAATCATGATGACTACCAGGAATTTTTGAAGTGTTTACACATTTACAGCAAGGAAATAATTACCCGACAAGAATTGCAATCATTGGTGGGTGATTTACTCGGAAAATATCCAGATCTTATGGATGGGTTTAATGATTTTTTGCTACAAGCTGAAAAGAATGATGGTGGATTCTTTGCTGGTGTCATGAATAAAAAGTCCTTATGGAATGAAGGACATGGACTGAAACCAATGAAGGCTGAAGACAGGGATAGAAATAGGGATCAACATAGAGACCACTATAGGGATGAAGAGATGAAAGGAAGGGACAAGTCAACTGTGATTCCCAACAAGGATGTTTCAGGTCTTAAGATGTCTCTATATCCCAGCAAGGAAAAGTATTTGTCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAGAGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATAGCTAGCCAGAAAACAGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTGTCTGTCACCTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGAAAAGATCAATAATAATATAATTAAAGGAGACAGCCCAATTCGTATTGATGAACACTTAACAGCTCTAAATCTTAGGTGTATTGAACGATTATATGGCGACCATGGGCTTGATGTGATGGAAGTGCTAAGGAAGAACGGTCCTCTAGCTTTGCCGGTGATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGACTTTAGCAAGGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTCGAGCACCAAAGCCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCTATTCTTCCAAACTTGGAGTTTGATTATCCTGATCCAGACATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGCACGACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTGCTAGGCCACAGGGTGCCGAGGATACAGAAGATGTTGTCAAGGCCAAGAATAATTCTGTCAAAAGTGGCACCATAAGTGTTGCCGAAAATGATGGTAGTCCTGGTGTTGGTGCTACCGTAATGAATCCTAGGCATATAAATACTTCTAGAAATGGGGATGAGTGTATGCCATTAGATCAGTCAACTTCTAGCAAAGCATGGCAATCAAATGGTGATAGTAGGGTTAGAGAAGACAAGTGTCTTGATTCAGACCGTACAGTGCGTAAAACTGAAACTTTGGGCAGTAATACACAACATGGTAAGACGAATGTTGTTGCATTCACATCTGATGAACTATCAGGAGTCAATAAGCAAGATCAGTCCAGTGAGTGGTTAGTGAATGCTGATGTCTCACCAGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAAGATAGATAATGCATCAGGACTCACTGCTACTCCATCTAGAAATGGTAATGTTTCTGTCGAGGGGGGACTTGAATTACCTTCATCAGAGGGTGGTGATTCTACAAGACCAGGTATAACCACAAATGGGGCCATCACTGGAGGTGCTGATGTTCGCAGATACCAAGAGGAATCAGTTCGACACTTCAAAAGTGAAAGAGAGGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAATTTTGCAGTTTATGGAGAGACTGGTTTGGATTCAATGCATAAAGGAAAGGATGGTGGTGTGAGTCAGCAATTCCAAAGTAGACATGGAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATGATGCGGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGAGATGGAACATCATTGCCATTTTCTGAACGCTTTCTACTAACCGTGAAGCCTTTGGCAAAGCATGTTCCCCCAGTGTTACATGAGAAAGACAAGAATTCTCGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCAGCAAAAATTAACTCGTCATCAGCTGAAAGGAAATGGAGGGCTTTAAATGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCAGATAACACAAAATTTGAGGATGATTGTCGAGCCATTATTGGAACTCAATCATATGTGTTATTCACATTGGACAAGCTGATATACAAACTCGTCAAACAGCTTCAAGCTGTTGCCAGTGATGAGATGGATAATAAGCTTCTCCAACTATATGCATATGAGAAATCAAGAAAACTTGGAAAGTTTGTTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGATCAAAGAAATTGTCTATTCAACTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTGTCGATGGACCCTAATTTTTCAGCCTATCTGCACAATGATTTCCTCTCTGTTGTCCCTGAGAAAAAGGAGAAGTCGGGGATTTTCTTGAAGAGGAACAAACGTAGATATGCCGGTAATGATGAATTCGCAAGCCAGGCTATGGAAGGACTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCTTCTAAGGTTTCATACGTTTTAGATACAGAAGACTTCTTGTATCGGATGAGAAGGAAAAGAAGAGCTTTGCATCTGAAGAGTTCATACTATGAACAGGAAAACTCTTCAAACGTTTGCTCAAGCAGAGTACTACGGTTCCGCAAATTGTTTTCCTTCACATGA 4233 0.4099 MKRSRDDGFMSSSSQLKRPMVSSRGEASGQAQMMNGGGQKLTTNDALAYLKAVKDIFQDKRNKYDDFLEVMKDFKAQRLDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAVLFQDHPDLLDEFTHFLPDTSAAASTHYASARNSMLRDRSSAIPTGRQMHVEKRERTMVSHGDRDPSVDRPDPDEDRGLSRAEKEQRRRAEKEKDRREDRDRRERERDDRDYEHDGSRDGERLSHKQKSDHKVEDNGAEPLLDADENIGRCSQEFAFCEKVKEKLRNHDDYQEFLKCLHIYSKEIITRQELQSLVGDLLGKYPDLMDGFNDFLLQAEKNDGGFFAGVMNKKSLWNEGHGLKPMKAEDRDRNRDQHRDHYRDEEMKGRDKSTVIPNKDVSGLKMSLYPSKEKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKGDSPIRIDEHLTALNLRCIERLYGDHGLDVMEVLRKNGPLALPVILTRLKQKQDEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSSSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFDYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLEPMLCVPARPQGAEDTEDVVKAKNNSVKSGTISVAENDGSPGVGATVMNPRHINTSRNGDECMPLDQSTSSKAWQSNGDSRVREDKCLDSDRTVRKTETLGSNTQHGKTNVVAFTSDELSGVNKQDQSSEWLVNADVSPASGMEQSNGRTKIDNASGLTATPSRNGNVSVEGGLELPSSEGGDSTRPGITTNGAITGGADVRRYQEESVRHFKSEREEGELSPNGDFEEDNFAVYGETGLDSMHKGKDGGVSQQFQSRHGEVCGEARGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVPPVLHEKDKNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSAERKWRALNDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKLGKFVDIVYHENARVLLHDENIYRIEYSPGSKKLSIQLMDYGHDKPEVTAVSMDPNFSAYLHNDFLSVVPEKKEKSGIFLKRNKRRYAGNDEFASQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLYRMRRKRRALHLKSSYYEQENSSNVCSSRVLRFRKLFSFT* 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00944 1410 MobiDBLite consensus disorder prediction 223 314 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 413 448 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 8 38 - -
Rops1g00944 1410 FunFam Paired amphipathic helix SIN3-like protein 124 195 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 886 916 - -
Rops1g00944 1410 SUPERFAMILY PAH2 domain 327 390 IPR036600 GO:0006355
Rops1g00944 1410 SUPERFAMILY PAH2 domain 121 194 IPR036600 GO:0006355
Rops1g00944 1410 MobiDBLite consensus disorder prediction 951 969 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 415 447 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 208 320 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 1 38 - -
Rops1g00944 1410 Coils Coil 255 277 - -
Rops1g00944 1410 FunFam Paired amphipathic helix protein SIN3 323 393 - -
Rops1g00944 1410 ProSiteProfiles PAH domain profile. 319 391 IPR003822 GO:0006355
Rops1g00944 1410 FunFam Paired amphipathic helix protein Sin3 45 107 - -
Rops1g00944 1410 Pfam Paired amphipathic helix repeat 344 388 IPR003822 GO:0006355
Rops1g00944 1410 Pfam Paired amphipathic helix repeat 148 192 IPR003822 GO:0006355
Rops1g00944 1410 Pfam Paired amphipathic helix repeat 63 106 IPR003822 GO:0006355
Rops1g00944 1410 MobiDBLite consensus disorder prediction 805 832 - -
Rops1g00944 1410 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Rops1g00944 1410 Gene3D Paired amphipathic helix 124 196 IPR036600 GO:0006355
Rops1g00944 1410 Coils Coil 552 572 - -
Rops1g00944 1410 PANTHER SIN3B-RELATED 39 1268 IPR039774 GO:0003714
Rops1g00944 1410 Pfam Sin3 family co-repressor 481 572 IPR013194 -
Rops1g00944 1410 SMART hdac_interact2seq4b 479 579 IPR013194 -
Rops1g00944 1410 Gene3D Paired amphipathic helix 324 392 IPR036600 GO:0006355
Rops1g00944 1410 MobiDBLite consensus disorder prediction 1025 1039 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 1052 1085 - -
Rops1g00944 1410 MobiDBLite consensus disorder prediction 805 825 - -
Rops1g00944 1410 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Rops1g00944 1410 Pfam C-terminal domain of Sin3a protein 1124 1370 IPR031693 -
Rops1g00944 1410 SUPERFAMILY PAH2 domain 39 108 IPR036600 GO:0006355
Rops1g00944 1410 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Rops1g00944 1410 MobiDBLite consensus disorder prediction 886 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00944 Rops-Chr1 22667016 22679837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00944 34 144 WRKY Transcription Factor Family AT4G12020 52.212 6.35e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops1g00944 Sin3a_C 5.7e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00944 1 22667016 22679837 Rops1g00944 1 22667016 22679837 ECH