Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00938 ATGGCTTTGAACATGATGCTTGTTCTGAGCCTTCTTATTGTTTTACATAGTTTTGTAATACCAACATGCCATTGCCAAACTAGTTCTTCCCAGAACATAGAAACTTTCTATCCAATAGAAACTTCAGAACCAGCCCCTACAACACAACCTCCTGAGGCACCACCAAAGCCACAAGCATCACCATCATCACCAGGGCCAGAACCAGAACCAGGGGCAGCATCCACCAGTTCTTCTTCATCAAATAGTAAGATAGTAACAGCTGTGGCTGCAACTGCAGCAAGTACTCTAGTTGTTTCGGGTTTGGTTTTCCTTTTACTTCAAAGGTGCTTCAGAGCAAGGAGGAGAAAAGTGATGACCAACAACACTGCTTCTGCACCAAATAGGCGTGCTGTGCCTCAGGTTAATGTGTTTGAGAGAATGGATGGAAACATCAAGGGATTGATTGTTGATGAGGATGGTTTGGATGTGGTTTATTGGAAAAAGCTTGAAGGTAAAAACTCAGACAAGGATTTCCAAAAGGAGGTCTTGCATAGTCCCAAAGACAGAGAAGAATATGATCATGAAGGAAAACAAGTGAAAAGATCTGAGTTCATTCAAGAAATTCCTCTTCTTAGAGGGAAATCTTCAACTTCCCACATGAATATATTTCCTGAAGACTCGTATACAATTATGAGAATTCCACCTCCTGCTCCTCCTCCCTTTGTTCCTGCATCAGTTGGAGGTGCTATAGAGGGTGTTCAGAAACCAGACTCTCCAACTCAACCATTTACTCTAAACCTTCTCCCTTCATCACCAAAACCACCCTCCACTACTTTCTCCTCAATTCCAAAATTGACCAGCCCTGAACCACCACCTTCCTTTCCAACAATATCTGATAGAAAGAGTCAAGCTCCAACACCACCTCCCCCTCCACCAATCCCAAATAGAGAGAGCTCAGCACCAGCACCACCTCCTCCACCAATCCCAGATAGAAAGAACTCAAAACCACCACCACCTCCGCCACCAATCCCTGCTAGAAAGAACCCAACACCACCCCCTCCTCCTCCACCAATCTCTTCTAGAAAGAGTCCAGCACCACCTCCTCCTCTACCAAAGGCAGGTGGTTTGAAGTCATCATCAAAACCGCCACCTACCCCTATTGAAACGCCAGTTACCACAAGTGAGCAAGGAAACTCTTCAGGTGAAGTAAAACTGAAACCATTGCATTGGGATAAGGTGAATACTAATCTAGACCACTCCATGGTGTGGGACAAAATTGACCATGGTTCTTTCAGGTTTGATGATGATCTTATGGAAGCTCTCTTCGGGTATGTTGTCACCAAACCAAACAGTAATAAGACCCCAAAAGCAAATGACTCAACAAGTCCAAGCAGGGATGCCTCAGCTCCATCAACAAATGCTTTCCTTCTAGATCCTAGAAAATCACAGAACACTGCTATAGTTTTGAAATCACTGGCAGTCTCAAGAAAAGAAATTATTGATGCACTTGTTGATGGTCAAGGCCTTATTATAGATACCATTGAAAAGCTTGCTAGAATAGCCCCAACAGAAGAAGAGCAATCCCTTATACTTGAATATGAAGGAGACCCAGCAAAACTTGCTGCAGCTGAATCTTTCTTGTATCATGTTCTCAAAGCTGTCCCTTCAGCATTTAAGCGTTTGAATGCCATGCTGTTCAGATTGAACTATGACTCAGAGATTCTAGAAATCAAGGAGTTTCTGCAGACCCTTGAGATGGGGTGTAAGGAGCTTAGAAACCAAGGAATGTTTGTGAAGCTTCTTGAAGCTGTGCTTAAGGCTGGAAATCGTATGAATGTAGGTACTCACAGAGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTAAGGAAGCTCTCTGATGTCAAAAGCACTGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAAGAAGTAGTACGTTCTGAAGGGAAACGTGTTGTTCTTAACCGCAACCACAGTTTGAGTCGTAGTAGCAGTAGAAGCAACAACAACAACAACAGTGGAGACTCTCAAAACTCTTCCGCTTCAAATGAACAAAGACAAAGGGAATATATAACACTAGGATTACCAATTGTAGGAGGGATCAGTTCTGAGTTTTCCAATGTAAAGAAAGCAGCACTTACCGATTACAACAGTTTTGTTAGTTCAATCTCACCACTCTCAGCCCGGATAGTTGAAATTCGACAACTAATTTCCCAGTGTGGAAATGAAAAAGGAGGAAAGTTTGTGAGAGAAATGAACCATTTTCTTGAAAATGCTGAGGAGGAATTGAAATTAGTGAGGGAAGAACAGACAAGGGTAATGCAGCTTGTGAAGAGAACAACAGATTATTATCAAGGAGGAGCTTCAAAAGATAGTGCTGAAGCCTCTCTTTATCTATTTGTCATAGTCAAGGATTTTCTGGGGATGGTTGATCAAGTATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGATATCTTATGCAAATTGA 2493 0.4248 MALNMMLVLSLLIVLHSFVIPTCHCQTSSSQNIETFYPIETSEPAPTTQPPEAPPKPQASPSSPGPEPEPGAASTSSSSSNSKIVTAVAATAASTLVVSGLVFLLLQRCFRARRRKVMTNNTASAPNRRAVPQVNVFERMDGNIKGLIVDEDGLDVVYWKKLEGKNSDKDFQKEVLHSPKDREEYDHEGKQVKRSEFIQEIPLLRGKSSTSHMNIFPEDSYTIMRIPPPAPPPFVPASVGGAIEGVQKPDSPTQPFTLNLLPSSPKPPSTTFSSIPKLTSPEPPPSFPTISDRKSQAPTPPPPPPIPNRESSAPAPPPPPIPDRKNSKPPPPPPPIPARKNPTPPPPPPPISSRKSPAPPPPLPKAGGLKSSSKPPPTPIETPVTTSEQGNSSGEVKLKPLHWDKVNTNLDHSMVWDKIDHGSFRFDDDLMEALFGYVVTKPNSNKTPKANDSTSPSRDASAPSTNAFLLDPRKSQNTAIVLKSLAVSRKEIIDALVDGQGLIIDTIEKLARIAPTEEEQSLILEYEGDPAKLAAAESFLYHVLKAVPSAFKRLNAMLFRLNYDSEILEIKEFLQTLEMGCKELRNQGMFVKLLEAVLKAGNRMNVGTHRGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRVVLNRNHSLSRSSSRSNNNNNSGDSQNSSASNEQRQREYITLGLPIVGGISSEFSNVKKAALTDYNSFVSSISPLSARIVEIRQLISQCGNEKGGKFVREMNHFLENAEEELKLVREEQTRVMQLVKRTTDYYQGGASKDSAEASLYLFVIVKDFLGMVDQVCIEIARNMQKRKISYAN* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00938 830 SMART it6_source 388 825 IPR015425 -
Rops1g00938 830 SUPERFAMILY Formin homology 2 domain (FH2 domain) 468 826 - -
Rops1g00938 830 MobiDBLite consensus disorder prediction 295 366 - -
Rops1g00938 830 Gene3D Formin, FH2 domain 409 829 IPR042201 -
Rops1g00938 830 MobiDBLite consensus disorder prediction 655 686 - -
Rops1g00938 830 MobiDBLite consensus disorder prediction 250 277 - -
Rops1g00938 830 MobiDBLite consensus disorder prediction 441 468 - -
Rops1g00938 830 MobiDBLite consensus disorder prediction 44 68 - -
Rops1g00938 830 Pfam Formin Homology 2 Domain 395 810 IPR015425 -
Rops1g00938 830 ProSiteProfiles Formin homology-2 (FH2) domain profile. 388 830 IPR015425 -
Rops1g00938 830 MobiDBLite consensus disorder prediction 656 686 - -
Rops1g00938 830 Coils Coil 749 776 - -
Rops1g00938 830 MobiDBLite consensus disorder prediction 41 80 - -
Rops1g00938 830 PANTHER FORMIN-RELATED 317 822 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Rops1g00938 830 MobiDBLite consensus disorder prediction 235 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00938 Rops-Chr1 22585823 22588925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00938 363 826 FH2 protein (formin) Gene Family AT1G70140 59.013 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00938 - - gmx:100780368 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00938 1 22585823 22588925 Rops1g00938 1 22585823 22588925 ECH