Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00921 ATGGACAAGGATGTCTGTGATCTATCCTCTACATGGGATTGTGATAATGGCAATTCTGTGGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTGAATCCATCCAAGAATAACGAGGGTTGTGTCAAAGAGTCTGTTGAAGGAGATGAAAGTGTGAACTCCTCTAACTCAGTTTCATCAGGAGGAGAGAAAACTGTCCAGGAGAAGAGCTCAACCAGGGACCCAGATGAAAGAAAGTTTGAGTGCCAATACTGTTTCAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCTCACAAGAAAGAAAGAATGAAGAAGAAAAGATTGCAGCTTCAAGCTAGAAGGGCTAGCATAAACTACTACCTCCAACCTTTTCAAAAAAACCATGGCTTTGCTTACCAAGGCTCTGATACTCCATGGTTCTATGATCCCTCTTCCTATAACTCTGAGTTCACCATGTGTGAAGAATCTCAGATTAGCTTCAATTCAAATGTTCAAAATACCAACTTTTTTGTTGATCAGAAATCTAGTTGGTATTCTATGCCTTCCCATGCTCCTTCCCAACAAGATACTCGCATGTTTGCTTTCTCCAATACAGATAATAAGCCTTTCATCTTCAAGCCTTGTCACTTCCCTGATTCAAACCAGAGCCATAGTAAAGCTTTAGATCTTCAACTAGGCCTCAACTTGCAGTCAGATACAAGAAGCTCTTTCTGA 723 0.4094 MDKDVCDLSSTWDCDNGNSVEKRLRLFGFELNPSKNNEGCVKESVEGDESVNSSNSVSSGGEKTVQEKSSTRDPDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARRASINYYLQPFQKNHGFAYQGSDTPWFYDPSSYNSEFTMCEESQISFNSNVQNTNFFVDQKSSWYSMPSHAPSQQDTRMFAFSNTDNKPFIFKPCHFPDSNQSHSKALDLQLGLNLQSDTRSSF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00921 240 FunFam zinc finger protein 5 53 132 - -
Rops1g00921 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Rops1g00921 240 MobiDBLite consensus disorder prediction 33 74 - -
Rops1g00921 240 MobiDBLite consensus disorder prediction 47 65 - -
Rops1g00921 240 Gene3D Classic Zinc Finger 53 131 - -
Rops1g00921 240 PANTHER ZINC FINGER PROTEIN 5 17 233 IPR044299 GO:0010090
Rops1g00921 240 SUPERFAMILY beta-beta-alpha zinc fingers 75 106 IPR036236 -
Rops1g00921 240 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00921 Rops-Chr1 22122453 22123370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00921 8 129 C2H2 Transcription Factor Family AT1G10480 46.721 6.82e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g00921 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00921 - - gmx:100799857 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00921 1 22122453 22123370 Rops1g00921 1 22122453 22123370 ECH