Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00919 ATGCCGGGGCGTCGGTCAAAGTCGGAGAGGAAGCACGACGGCGAGAAGCCGCTCCGGCGGGACCCTTATGAGGTCCTTGACGTTTCACCAAACTCCACTGATCAGGAAATCAAAACCGCTTACCGGAAAATGGCACTCAAATACCATCCTGACAAGAATGCCAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCTTATAACATCTTGGCAGATCCTGACAAACGGCGTCAGTATGACTCAGCTGGCTTTGAGGCTGTTGAATCAGATAGCCAAGAGTTGGAGTTGGATCTTTCAAGTTTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGCAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCAACTGTTTTGGAAGAGGCACTCAATGGTTTAGTTACCATTCGTCCACTTCCATTGGGACAGTTTATAACTAGAAGGGTTGAGAAGCAATGTGCACACTTTTATTCAGTTACGATAACAGAAGAGGAAGCACGAGCTGGATTTGTCTGTCGAGTGCAATCATCAGACAAAAGCAAGTTCAAGTTATTGTATTTTGATCAGGAAGACAATGGTGGCTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACTGGGAAGGTTACCTCTGCTGGAATGTATTTTCTTGGGTTTCCTGTTTATCGGTTGGATCAAACAATCAACTCTATAGCTGCAGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTGGATGCGTTCCAGCCATGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCCGTTTATGGTGACAACTTCTTCAAAAGTGCAAACTATACAATAGAAGCTCTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAAGCTCAAATTTTGTCTAAAAGGGCAGAGATATCAAAGTTTGAGACAGACTATCGAGAGGTTTTGGCACAATTCACAGAGATGACAAGCAGATATGCACAAGAAATGCAAGCAATTGACGAGCTATTAAAACAAAGAAATGAAATACATGCATCATACACTGTTGCTCCTTTAAAACGGAGTACCAGTAAGAGCAGAAGTAAAAGTTCTTCGAAGGAGGCAAAAGAAGATGGCCAAGCAAGGGAGAAGAGGAGTACAAGAGATCGGCCAAAGAAGAAGAAATGGTATAATCTCCACTTGAAAGTTGATAAGAGAAAGGCTTGCTAA 1230 0.4187 MPGRRSKSERKHDGEKPLRRDPYEVLDVSPNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILADPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGQFITRRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTINSIAAAKDPDTSFFRKLDAFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFETDYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTVAPLKRSTSKSRSKSSSKEAKEDGQAREKRSTRDRPKKKKWYNLHLKVDKRKAC* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00919 409 Pfam DnaJ domain 21 83 IPR001623 -
Rops1g00919 409 SUPERFAMILY Chaperone J-domain 20 90 IPR036869 -
Rops1g00919 409 MobiDBLite consensus disorder prediction 387 401 - -
Rops1g00919 409 MobiDBLite consensus disorder prediction 367 386 - -
Rops1g00919 409 MobiDBLite consensus disorder prediction 1 34 - -
Rops1g00919 409 CDD DnaJ 21 75 IPR001623 -
Rops1g00919 409 Gene3D DnaJ domain 5 104 IPR036869 -
Rops1g00919 409 PRINTS DnaJ domain signature 23 41 IPR001623 -
Rops1g00919 409 PRINTS DnaJ domain signature 41 56 IPR001623 -
Rops1g00919 409 PRINTS DnaJ domain signature 58 78 IPR001623 -
Rops1g00919 409 PRINTS DnaJ domain signature 78 97 IPR001623 -
Rops1g00919 409 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Rops1g00919 409 Coils Coil 291 318 - -
Rops1g00919 409 ProSiteProfiles dnaJ domain profile. 21 86 IPR001623 -
Rops1g00919 409 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 8 408 - -
Rops1g00919 409 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g00919 409 MobiDBLite consensus disorder prediction 355 409 - -
Rops1g00919 409 SMART dnaj_3 20 78 IPR001623 -
Rops1g00919 409 FunFam Chaperone protein dnaJ 16 4 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00919 Rops-Chr1 22056251 22060937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00919 19 84 C2H2 Transcription Factor Family AT1G74250 39.437 2.33e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00919 - - gmx:100800929 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00919 1 22056251 22060937 Rops1g00919 1 22056251 22060937 ECH