Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00911 ATGTCGGTCTCCTTCTCCAACCGCTTCACCGACTCCGACCTCCTCTGCGGCGAGGACACCTCCGGTATCTTGTCCGGAGAGTCGCCGGAATGTTCCTCCTCCGACCTCGATTCTTCGCTTCCGGAGGAGGAAGAGTCCATCGCCGGATTCATCGAAGAAGAACGGAACTTCGTCACCGGATTCGATTACCTCTCAAGATTCCAGTCTCACTCGCTCGATGCTACCGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTTCAGGCTTATTATGCTTTTCAACCGCTAACGGCTTATCTTTCCGTCAATTACATGGATCGGTTCTTGAATTCTCGGCAGTTGCCGCAAACAAACGGGTGGCCACTGCAACTTCTATCAGTGGCGTGCTTGTCTTTAGCGGCAAAGATGGAGGAACCTCTAGTTCCGTCTCTGTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAGCCCAGAACAATTAGAAGGATGGAGCTACTTGTTCTGGGCGTCTTGGATTGGAGGCTAAGATCTGTCACCCCATTTAGCTTCCTCAGTTTCTTTGCGTGCAAGTTAGATTCAACTGGAACTTTTACTGGCTTCCTCGTTTCACGGGCTACACAAATTATCTTATCCAATATCCGAGAGGCCAGTTTTCTTGCTTATTGGCCATCATGCATTGCTGCAGCGGCCATACTCCATGCAGCTAATGAAATTCCTAATTGGTCCCTCATTAAGCCTGAGCATGCCGAGTCGTGGTGCGAGGGGCTAAGAAAAGAGAAAATTTTAGGGTGTTACCGTTTAATGCAAGAATTTGTGAGTGACAATAACCAGAGGAAACCCCCTAAAGTGTTACCGCAGCTACGAGTGACAACTCGGCCCCTTATGAGTTCAAGTGCCTCGTCATTCTCATCATCCTCCTCTTCTTCTCCTTCCTCCTCACTGTCCTATAAAAGGAGGAAATTAAATAACTGTTCGTGGGTAGATGATGACAAAGGAAACTCCCAATGA 1011 0.4827 MSVSFSNRFTDSDLLCGEDTSGILSGESPECSSSDLDSSLPEEEESIAGFIEEERNFVTGFDYLSRFQSHSLDATAREESVAWILKVQAYYAFQPLTAYLSVNYMDRFLNSRQLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPFSFLSFFACKLDSTGTFTGFLVSRATQIILSNIREASFLAYWPSCIAAAAILHAANEIPNWSLIKPEHAESWCEGLRKEKILGCYRLMQEFVSDNNQRKPPKVLPQLRVTTRPLMSSSASSFSSSSSSSPSSSLSYKRRKLNNCSWVDDDKGNSQ* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00911 336 Gene3D - 51 240 - -
Rops1g00911 336 SUPERFAMILY Cyclin-like 40 176 IPR036915 -
Rops1g00911 336 CDD CYCLIN_AtCycD-like_rpt2 179 269 - -
Rops1g00911 336 SMART Cyclin_C_2 179 306 IPR004367 -
Rops1g00911 336 SUPERFAMILY Cyclin-like 161 280 IPR036915 -
Rops1g00911 336 PANTHER CYCLINS 45 275 IPR039361 -
Rops1g00911 336 MobiDBLite consensus disorder prediction 296 319 - -
Rops1g00911 336 SMART cyclin_7 82 170 IPR013763 -
Rops1g00911 336 Pfam Cyclin, C-terminal domain 179 288 IPR004367 -
Rops1g00911 336 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Rops1g00911 336 Gene3D - 60 177 - -
Rops1g00911 336 Pfam Cyclin, N-terminal domain 49 176 IPR006671 -
Rops1g00911 336 CDD CYCLIN_AtCycD-like_rpt1 76 174 - -
Rops1g00911 336 FunFam D2/4-type cyclin 60 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00911 Rops-Chr1 21936579 21940179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00911 1 336 Core Cell Cycle Gene Families AT1G70210 64.307 3.03e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00911 K18810 - gmx:100775224 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00911 1 21936579 21940179 Rops1g00911 1 21936579 21940179 ECH