Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00885 ATGCCATTTGGTTTGGTCTCAGCCTGGAACAAACGTCGTAGAAGCAAGTCTCAAGATCATACAGACCCATGGATTTACAAACCTGCACAACTTTGGCAACTTGAAGATCAAACACCACGACCTACAAAAAGGCTGCTGCATGGGTCAGCTGTTTTCACACTCAAGGAGATGGAAGAGGCAACACGTTCATTCAGTGATGAAAATTTTCTCGGAAAAGGAGGATTTGGCAAAGTCTACCGAGGCACCTTACGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTGCCAGCAATTAAAGAAGCAGAGGGGGAACGTGAGTTCCGAGTTGAAGTTGACATTTTGAGCAGACTGAACCACCCAAATCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATACGAATATATGCATAATGGGAACCTGCAAGATCATTTGAATGGAATTGGGGAAAGAAACATGGATTGGCCTCTCAGACTACAAGTGGCACTGGGAGCTGCAAAAGGGCTTGCTTATCTCCATTCGAGTTCTGATGTTGGAATTCCCATTGTTCATAGAGATTTTAAATCAACCAATGTTCTCTTAAATGCAAACCTTGAAGCAAAGATATCTGATTTTGGGCTTGCCAAGTTAATGCCAGAAGGACAAGAAACTCATGTGACTGCCAGAGTGCTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGGAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACTGGACGTCGTGCTGTAGATCTAAACCAAGGTCCTAATGATCAGAACCTTGTGCTACAGGTGAGGCACATACTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTCCGAACTGAGAGTAACGAGAGACCTTCAATGGCAGATTGTGTAAAAGAACTCCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCACAGTTTGAGACTGATCTAG 1089 0.4279 MPFGLVSAWNKRRRSKSQDHTDPWIYKPAQLWQLEDQTPRPTKRLLHGSAVFTLKEMEEATRSFSDENFLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKEAEGEREFRVEVDILSRLNHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGERNMDWPLRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNVLLNANLEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRTESNERPSMADCVKELLMIIYTNSKGLGMVMHSLRLI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00885 362 FunFam receptor-like serine/threonine-protein kinase NCRK 143 353 - -
Rops1g00885 362 Gene3D Transferase(Phosphotransferase) domain 1 143 352 - -
Rops1g00885 362 Pfam Protein kinase domain 65 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00885 362 PIRSF ILK 36 352 - -
Rops1g00885 362 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g00885 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Rops1g00885 362 SUPERFAMILY Protein kinase-like (PK-like) 51 348 IPR011009 -
Rops1g00885 362 FunFam serine/threonine-protein kinase PBS1-like 31 142 - -
Rops1g00885 362 Gene3D Phosphorylase Kinase; domain 1 29 142 - -
Rops1g00885 362 CDD STKc_IRAK 70 341 - -
Rops1g00885 362 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Rops1g00885 362 PANTHER OS01G0750732 PROTEIN 44 344 - -
Rops1g00885 362 ProSiteProfiles Protein kinase domain profile. 64 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00885 Rops-Chr1 21387132 21390168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00885 47 345 Receptor kinase-like Gene Family AT3G58690 47.039 3.52e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Rops1g00885 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00885 - - gmx:100796654 684.485