Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00881 ATGAGTAGCAGAGACTGTTGCAAAGAGATGGTGCGATGGCTGAAAAACACAAGCAATTTGCTGCCATTTGTGGGAATGATGGTGGCCATGTTGGCTCAAAGTGGAAGCATGGTGGTAATCAAAGTTGCCATGATTGATGGAATGAACAAGTATGTCATGGTTGTGTATTCCATGGCACTCTCCAGTTTCATGCTTCTTCCCTTTGTTTTCCTTATCCACAGGTCAGAGCGTCCCCCTCTCACAATCTCAGCACTTTGCAGCTTCTTTTTGCTTGCTCTGATTGGATCTTCAGCTCAGATAATGGCTTATGTTGGCATAGAACTCAGTTCACCTACTCTTGCTTCAGCCATGCTTAACCTCATTCCAGCTTTCACTTTCGTACTTGCTCTCATTTTCAGGATGGAAATAGTATATTGGAGACATTTTAGCAGCCAAGCTAAAGTGTTAGGAACTTCAGTGTCAATTGCTGGAGCATTTGTTATGATATTGTACAAGGGCCCACCAATCTTCAAGACACACTCATCAGACTCTTCTCACAAACTTCAATTTTCACCACAATCAAACTGGATCTTTGGAGGGTTGTTCTGTGCTGGAGATTCTTTACTTTCTTCCATGTGGTACATATATCAGGCTTCAGTTACAAAGAAATACCCTGATGTAATAGTCATAGTCTTCTTCCAAATCTTATTTACGACCATTCAGTCAGCAGTATTTGCCTTATTTGCAGTTGGAGATCCAAGCGCATGGGTGATAAAGCTTGATATGGGGTTAATTGGCATTTTATATCAGGCAATAGCTGCAACAGTGATACGTTACATCCTATGCACATGGTGCGTCCAAAGAGCTGGACCTCTGTTTTGTGCTATGTTCAAGCCAGTGGGAATAATCTTCACCGTTTCAATGGGTGCAATTTTTCTTGGGGATGATTTTAATCTTGGAAGTTTGATTGGTGCGGTTATCATCGTCTTAGGATTTTACGCTGTGCTGTGGGGAAAAGCCAGAGAAGAGGAGAAGGTTGAGAGAGGGATTGAGAACTTGGAATCTTCGTGCCATAATGTTCCTCTGTTACAAAACAAGGCATAA 1083 0.4211 MSSRDCCKEMVRWLKNTSNLLPFVGMMVAMLAQSGSMVVIKVAMIDGMNKYVMVVYSMALSSFMLLPFVFLIHRSERPPLTISALCSFFLLALIGSSAQIMAYVGIELSSPTLASAMLNLIPAFTFVLALIFRMEIVYWRHFSSQAKVLGTSVSIAGAFVMILYKGPPIFKTHSSDSSHKLQFSPQSNWIFGGLFCAGDSLLSSMWYIYQASVTKKYPDVIVIVFFQILFTTIQSAVFALFAVGDPSAWVIKLDMGLIGILYQAIAATVIRYILCTWCVQRAGPLFCAMFKPVGIIFTVSMGAIFLGDDFNLGSLIGAVIIVLGFYAVLWGKAREEEKVERGIENLESSCHNVPLLQNKA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00881 360 PANTHER WAT1-RELATED PROTEIN 22 340 IPR030184 GO:0016020|GO:0022857
Rops1g00881 360 Pfam EamA-like transporter family 25 162 IPR000620 GO:0016020
Rops1g00881 360 Pfam EamA-like transporter family 192 329 IPR000620 GO:0016020
Rops1g00881 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00881 Rops-Chr1 21315584 21319036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00881 4 345 Nodulin-like Gene Family AT5G40240 42.286 1.08e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00881 - - gmx:100792109 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00881 1 21315584 21319036 Rops1g00881 1 21315584 21319036 ECH
Rops1g00881 1 21315584 21319036 Rops2g03980 2 72809354 72815267 ECH